EY660351

Overview
NameEY660351
Unique NameEY660351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660351_ssr389 microsatellite EY660351_ssr389:389..408. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13499 contig Csv1_Contig13499:4..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.219e-12
Identity = 23/58 (39.66%), Postives = 33/58 (56.90%), Query Frame = 1
Query:  607 AAYFAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            A     P  D++  W+A I GP ++PF  G F +S+ F  +YP KPP V F + +F P
Sbjct:   22 AGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHP 79          

HSP 2 Score: 38.1206 bits (87), Expect = 3.219e-12
Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  771 FHPYINSNGSICLDILKEQWSP 836
            FHP + ++GSICLDIL+ +WSP
Sbjct:   77 FHPNVYADGSICLDILQNRWSP 98          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 3.269e-12
Identity = 23/54 (42.59%), Postives = 31/54 (57.41%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            A P  D+  +++  I GP DSPF GGVF + +    DYP   PKV F T ++ P
Sbjct:   25 ATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHP 78          

HSP 2 Score: 40.0466 bits (92), Expect = 3.269e-12
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3
Query:  771 FHPYINSNGSICLDILKEQWSPAL 842
            +HP I+  G ICLDILK++WSPAL
Sbjct:   76 YHPNIDKLGRICLDILKDKWSPAL 99          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 4.214e-12
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            A P+ D++  W A I+GP+D+PF  G F + + F   YP KPP V F + +F P
Sbjct:   26 ASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHP 79          

HSP 2 Score: 36.5798 bits (83), Expect = 4.214e-12
Identity = 17/40 (42.50%), Postives = 23/40 (57.50%), Query Frame = 3
Query:  771 FHPYINSNGSICLDILKEQWSPALTYPRXLCH-XLLLTDP 887
            FHP + ++G +CLDIL+ +WSP       L     LL DP
Sbjct:   77 FHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDP 116          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 4.245e-12
Identity = 21/54 (38.89%), Postives = 33/54 (61.11%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            A P  ++M ++   I+GP+ SP+ GGVF + +  P +YP   PKV F T ++ P
Sbjct:   27 ASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHP 80          

HSP 2 Score: 40.0466 bits (92), Expect = 4.245e-12
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3
Query:  771 FHPYINSNGSICLDILKEQWSPAL 842
            +HP I+  G ICLDILK++WSPAL
Sbjct:   78 YHPNIDKLGRICLDILKDKWSPAL 101          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.449e-12
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            A P  D++F W+ TI G  D+ F G  + +S+ F  DYPFKPPKV F T  F P
Sbjct:   57 AFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHP 110          

HSP 2 Score: 35.039 bits (79), Expect = 5.449e-12
Identity = 13/23 (56.52%), Postives = 19/23 (82.61%), Query Frame = 3
Query:  771 FHPYINSNGSICLDILKEQWSPA 839
            FHP ++  G+ICLDIL+++WS A
Sbjct:  108 FHPNVDVYGNICLDILQDKWSSA 130          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 5.514e-12
Identity = 23/58 (39.66%), Postives = 33/58 (56.90%), Query Frame = 1
Query:  607 AAYFAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            A     P  +++  W A I GP D+P+ GG F +++ F  DYP KPP V F + +F P
Sbjct:   22 AGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79          

HSP 2 Score: 40.0466 bits (92), Expect = 5.514e-12
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  771 FHPYINSNGSICLDILKEQWSP 836
            FHP I ++GSICLDIL+ QWSP
Sbjct:   77 FHPNIYADGSICLDILQNQWSP 98          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 7.062e-12
Identity = 23/52 (44.23%), Postives = 31/52 (59.62%), Query Frame = 1
Query:  625 PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            P AD++  W A I GP+D+PF  G F + + F   YP KPP V F + +F P
Sbjct:   28 PCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHP 79          

HSP 2 Score: 37.7354 bits (86), Expect = 7.062e-12
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  771 FHPYINSNGSICLDILKEQWSP 836
            FHP + +NG +CLDIL+ +WSP
Sbjct:   77 FHPNVYANGELCLDILQNRWSP 98          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 9.299e-12
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            A P  D++ ++Q TI GP  SP+  G+F + ++ P DYP + PKV F T ++ P
Sbjct:   25 AEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHP 78          

HSP 2 Score: 37.7354 bits (86), Expect = 9.299e-12
Identity = 15/24 (62.50%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  771 FHPYINSNGSICLDILKEQWSPAL 842
            +HP I+  G ICLD+LK  WSPAL
Sbjct:   76 YHPNIDRLGRICLDVLKTNWSPAL 99          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 1.210e-11
Identity = 23/52 (44.23%), Postives = 31/52 (59.62%), Query Frame = 1
Query:  625 PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            P  +++  W A I GP D+PF  G F ++I F  +YP KPP V F + VF P
Sbjct:   28 PTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHP 79          

HSP 2 Score: 37.7354 bits (86), Expect = 1.210e-11
Identity = 18/40 (45.00%), Postives = 24/40 (60.00%), Query Frame = 3
Query:  771 FHPYINSNGSICLDILKEQWSPALTYPRXLCH-XLLLTDP 887
            FHP + ++G ICLDIL+ +WSP       L     LL+DP
Sbjct:   77 FHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDP 116          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 1.568e-11
Identity = 21/54 (38.89%), Postives = 29/54 (53.70%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F T ++ P
Sbjct:   25 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHP 78          

HSP 2 Score: 41.2022 bits (95), Expect = 1.568e-11
Identity = 15/24 (62.50%), Postives = 21/24 (87.50%), Query Frame = 3
Query:  771 FHPYINSNGSICLDILKEQWSPAL 842
            +HP ++ +G ICLDILK++WSPAL
Sbjct:   76 YHPNVDKSGRICLDILKDKWSPAL 99          
The following BLAST results are available for this feature:
BLAST of EY660351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
UBC1_CAEEL3.219e-1239.66Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2N_DICDI3.269e-1242.59Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC2_DEBHA4.214e-1242.59Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC36_ARATH4.245e-1238.89Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC20_ARATH5.449e-1248.15Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC2_WHEAT5.514e-1239.66Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_USTMA7.062e-1244.23Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC13_YEAST9.299e-1240.74Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBCD6_DROME1.210e-1144.23Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBE2N_MACFA1.568e-1138.89Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-C08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660351 ID=EY660351; Name=EY660351; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAG
AAATTCCCAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTAC
AGAAGGACCCTCCTGCTTCTTGTAGCGCTGGTTCTTTCTTTATCTCCTTC
TCAATCTTATTTGTGTTTCTATTTTCATTTGTCATTGAAGACTATATACT
CATAGAGTTGACTTATCTACCCACTAATCACTCCCACGATGGAGAGGCTT
AAAGTTTTTAAGATACCAGGTGAAACGGAACTTTATTTCTTGGTTCCAAT
TCCACTTCTCTTCTCGCAGCACTGGTTCTTTCTTCATTTCCATCTCAGCA
TGTTTTCTTATTTTTTTCTATTTTATTTGTCATTGAAGATATATATATAT
ATATATATGTATTCATGAAGTTAACTTGACTTATCAACCCACTAATCTCT
CACATGATGGGAGGAATAAAACTTTGAAGATATTAGGTGAAATGGAATTT
TATTTCTTGGTTCCAAATCCACTTGCTTTTCTAATTATCTAAACTTTTTT
GCCTTTAAGTCCATCACAGCTTTGAGTTAATCTTTTGGAACTTTGTAATT
TTGAGTGCTGCCTATTTTGCAGGCCCTGTTGCTGATGACATGTTCCATTG
GCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTAT
TTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAAG
GTGGNCTTCCGTACTAANGTTTTCACCCCTACATCAACAGCAATGGTAGC
ATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACATATCC
NAGGNNACTCTGTCATTNGCTACTACTTACTGATCCGA
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