EY660349

Overview
NameEY660349
Unique NameEY660349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 66/178 (37.08%), Postives = 99/178 (55.62%), Query Frame = 2
Query:   26 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNII--RKTGIXGIVNGMDVQE*TP 541
            + DNQ RF+LLC AA EAP +L L    Y     GE  +F+ NDWH  L+P  L   Y+P G+YK A+ +  IHN+A+QG      +  L LP+++  +  ++       +    G  +N +K  I+ SD ++TVS  YA E+ +  E G  L +++  RK+ I GI NG++V E  P
Sbjct:  250 FGDNQFRFTLLCHAACEAPLVLPLGGFTY-----GEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPAATYTNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITT-VEGGYGLQDLLSSRKSVINGITNGINVDEWNP 421          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.158e-23
Identity = 72/177 (40.68%), Postives = 93/177 (52.54%), Query Frame = 2
Query:   17 GEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNIIRKTG--IXGIVNGMDVQE*TP 541
            G D  D   R  LLC+AA+E P  +      Y  G    ++VF+ANDWHT+L+P YLK  Y   G    A+ V  IHNIA+QGR   +DF  L+LP  +   F   D    P  G  +N   AGI  +D +LTVS  YA EL +  E G  L  II ++     GIVNG+D  +  P
Sbjct:  354 GGDRTDILKRMVLLCKAAIEVPWYVPCGGYCYGDG----NLVFLANDWHTALLPVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYD----PFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTA-EGGWGLHGIINESDWKFQGIVNGIDTTDWNP 521          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.512e-23
Identity = 67/173 (38.73%), Postives = 93/173 (53.76%), Query Frame = 2
Query:   44 RFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNIIRKTG--IXGIVNGMDVQE*TP*LTIY 556
            R  L C+AA+E P  +      Y  G    ++VF+ANDWHT+L+P YLK  Y+  G+    + V  IHNIA+QGR   EDF  ++LP  +   F   D    PV G   N   AG+  +D V+TVS  Y+ EL    + G  L  II +    + GIVNG+D +E  P L ++
Sbjct:  381 RMVLFCKAAIEVPWHVPCGGVCYGDG----NLVFIANDWHTALLPVYLKAYYRDNGIMNYTRSVLVIHNIAHQGRGPLEDFSYVDLPPHYMDPFKLYD----PVGGEHFNIFAAGLKTADRVVTVSHGYSWEL-KTSQGGWGLHQIINENDWKLQGIVNGIDTKEWNPELDVH 544          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.745e-23
Identity = 66/178 (37.08%), Postives = 98/178 (55.06%), Query Frame = 2
Query:   26 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNII--RKTGIXGIVNGMDVQE*TP 541
            + DNQ RF+LL  AA EAP +L L    Y     GE  +F+ANDWH +L+P  L   Y+P G+YK A+ +  IHNIA+QG      +  L LP Q+  + ++I       +    G  +N +K  I  +D +LTVS  Y+ E+ +  E G  L  ++  R++ + GI NG+DV +  P
Sbjct:  239 FGDNQFRFTLLSHAACEAPLVLPLGGFTY-----GEKCLFLANDWHAALVPLLLAAKYRPYGVYKDARSIVAIHNIAHQGVEPAVTYNNLGLPPQWYGAVEWIFPTWARAHALDTGETVNVLKGAIAVADRILTVSQGYSWEITT-PEGGYGLHELLSSRQSVLNGITNGIDVNDWNP 410          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: SSG2_PEA (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.503e-23
Identity = 70/181 (38.67%), Postives = 95/181 (52.49%), Query Frame = 2
Query:   44 RFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNIIRKTG--IXGIVNGMDVQE*TP*LTIYRCQYDASL 580
            R  L C+AA+E P  +      Y  G    ++VF+ANDWHT+L+P YLK  Y+  G+    + V  IHNIA+QGR   EDF  ++L   +   F   D    PV G   N   AG+  +D ++TVS  YA EL    E G  L NII ++     GIVNG+D ++  P       Q+DA L
Sbjct:  366 RMVLFCKAAVEVPWHVPCGGICYGDG----NLVFIANDWHTALLPVYLKAYYRDHGLMNYTRSVLVIHNIAHQGRGPVEDFNTVDLSGNYLDLFKMYD----PVGGEHFNIFAAGLKTADRIVTVSHGYAWEL-KTSEGGWGLHNIINESDWKFRGIVNGVDTKDWNP-------QFDAYL 530          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.152e-21
Identity = 63/168 (37.50%), Postives = 88/168 (52.38%), Query Frame = 2
Query:   44 RFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNIIRKTG--IXGIVNGMDVQE*TP 541
            R  L C+AA+E P       + Y  G    ++VF+ANDWHT+L+P YLK  Y+  G+ +  + V  IHNIA+QGR   +DF  ++LP  +   F   D    PV G   N   AG+  +D  +TVS  Y  E+    + G  L  II      + GIVNG+D+ E  P
Sbjct:  308 RMILFCKAAVEVPWFAPCGGSIYGDG----NLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFATMDLPEHYIDHFRLYD----PVGGEHSNVFAAGLKMADRAVTVSHGYLWEI-KTMDGGWGLHEIINHNDWKLQGIVNGIDMAEWNP 466          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.564e-20
Identity = 59/169 (34.91%), Postives = 90/169 (53.25%), Query Frame = 2
Query:   23 DYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNII--RKTGIXGIVNGMD 523
            +Y DN  RF    +A LE  +I+NLN +           V   +DWHT+LIP YLKT+Y+    ++  K V  +HN+ YQG F  E   L     Q     D ++ Y        +N++K G+  +D++ TVSP YA+E+ +  + G  LD ++  RK  + GI+NG+D
Sbjct:  119 EYLDNAERFVFFSRAVLEICKIMNLNFD-----------VIHCHDWHTALIPLYLKTLYRECSCFEKTKTVLTVHNLGYQGIFPREKLELTGF-GQEMFHIDGLEFYG------MVNFLKGGLFNADIITTVSPTYAKEILT-PDYGAGLDGVLRKRKENLVGIINGID 268          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: GLGA_OPITP (Glycogen synthase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.043e-20
Identity = 66/180 (36.67%), Postives = 100/180 (55.56%), Query Frame = 2
Query:   11 GTGE-DYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNII--RKTGIXGIVNGMDVQE*TP 541
            G GE DY+DN  RF   C+  +E  R+ ++ +          DVV  A+DW  +L+P  L+   + +G   + K +F IHNIA+QG F    F   NLP +  +S D ++ Y       +IN+MKAGIL +D V TVSP YA+E+    E G  LD ++  R++ + G++NG+D +   P
Sbjct:  102 GNGERDYEDNSDRFIFFCKGVVETLRLADMQA----------DVVH-AHDWQAALLPLLLREAERRQGGMLAMKTIFTIHNIAFQGIFPRAVFARTNLPDEL-NSVDGLEYY------EQINFMKAGILFADRVTTVSPRYAEEI-QTPEFGCGLDGVVQTRESDLVGLLNGVDTKVWNP 262          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPT (Glycogen synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.730e-19
Identity = 71/207 (34.30%), Postives = 103/207 (49.76%), Query Frame = 2
Query:   17 GEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNI--IRKTGIXGIVNGMDVQE*TP*L-TIYRCQYDASL*WMRSSSEEALQQKVG 628
            G+D+ DN LRF+ L Q      + L          P+ +  V  A+DW T L+P YLK   +P       K VF IHN+A+QGRF +E  G L LP +     D I+ Y        I ++KAG+  +D + TVSP YA E+  G E G+ LD +  +R   + GI+NG+D     P    +    YD      R+ +++ LQ + G
Sbjct:  104 GKDWPDNGLRFAALAQVGAALGQGLL---------PHYKPDVLHAHDWQTGLLPAYLKYSGRP-----GPKTVFTIHNLAFQGRFPYELLGRLGLPER-AFGLDGIEYYG------GIGYLKAGLQLADRITTVSPSYAAEI-QGSEAGMGLDGLLQLRADRLSGILNGIDTDVWNPASDALISATYDVESIAARARNKKVLQARFG 288          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPA (Glycogen synthase OS=Rhodopseudomonas palustris GN=glgA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.730e-19
Identity = 71/207 (34.30%), Postives = 103/207 (49.76%), Query Frame = 2
Query:   17 GEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNIIRKTG--IXGIVNGMDVQE*TP*L-TIYRCQYDASL*WMRSSSEEALQQKVG 628
            G+D+ DN LRF+ L Q      + L          P+ +  V  A+DW T L+P YLK   +P       K VF IHN+A+QGRF +E  G L LP +     D I+ Y        I ++KAG+  +D + TVSP YA E+  G E G+ LD ++R     + GI+NG+D     P    +    YD      R+ +++ LQ + G
Sbjct:  104 GKDWPDNGLRFAALAQVGAALGQGLL---------PHYKPDVLHAHDWQTGLLPAYLKYSGRP-----GPKTVFTIHNLAFQGRFPYELLGRLGLPER-AFGLDGIEYYG------GIGYLKAGLQLADRITTVSPTYAAEI-QGSEAGMGLDGLLRLRADRLSGILNGIDTDVWNPASDALISATYDVESIAARARNKKVLQARFG 288          
The following BLAST results are available for this feature:
BLAST of EY660349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
SSY1_ARATH6.786e-2437.08Soluble starch synthase, chloroplastic/amyloplasti... [more]
SSY21_ORYSJ1.158e-2340.68Soluble starch synthase 2-1, chloroplastic/amylopl... [more]
SSY2_SOLTU1.512e-2338.73Granule-bound starch synthase 2, chloroplastic/amy... [more]
SSY1_SOLTU5.745e-2337.08Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSG2_PEA7.503e-2338.67Granule-bound starch synthase 2, chloroplastic/amy... [more]
SSY22_ORYSJ3.152e-2137.50Soluble starch synthase 2-2, chloroplastic/amylopl... [more]
GLGA_THEYD1.564e-2034.91Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
GLGA_OPITP2.043e-2036.67Glycogen synthase OS=Opitutus terrae (strain DSM 1... [more]
GLGA_RHOPT1.730e-1934.30Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_RHOPA1.730e-1934.30Glycogen synthase OS=Rhodopseudomonas palustris GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660349 ID=EY660349; Name=EY660349; organism=Citrus sinensis; type=EST; length=831bp
CCACGCGTCCGGGACTGGAGAGGACTACCAGGACAACCAACTTCGCTTCA
GCTTGTTGTGCCAGGCAGCTCTTGAAGCACCGAGAATTCTGAATCTTAAC
AGCAACAAATATTTCTCTGGACCATATGGTGAAGATGTCGTTTTTGTTGC
TAATGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATA
AGCCCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTGTATCCACAAT
ATTGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCT
TCCAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAAC
CTGTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCA
GACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTTGTTCTGG
TGAAGAACAAGGAGTAGAATTGGATAATATCATCCGTAAAACTGGCATTA
ANGGAATTGTGAACGGGATGGATGTCCAGGAGTGAACCCCTTGACTGACA
ATATATAGGTGTCAATATGATGCTTCACTGTGATGGATGCGAAGCTCTTC
TGAGGAAGCCCTCCAGCAGAAAGTGGGTGCCTGTCGATAGAATATTCTGT
CATAGGCTCATTGGTAGACTGAAGAGCAGAAGGCTCGATATTCTTGAGCT
GCATTCCCATTTCTCAAGAGATGTCAGATATAGTCCTGGACTGGCAAAAA
CCATGGAGAGCAGCTTGACAAGTTGAGAACTGTACCTGAGAAAGCAGAGA
GTACGAATTCATATTCTCTGCGCTATGAAAT
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