EY660349

Overview
NameEY660349
Unique NameEY660349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: GLGA_PECCP (Glycogen synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 2
Query:   26 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNIIR----KTGIXGIVNGMD 523
            Y DN LRF+LL     E    L+          Y    +  A+DWH  L   YL    +P      AK +F +HN+AYQG F       L+LP +F   +  ++ Y       +I+++KAG+  +D + TVSP YA E+ +    G  ++ +++    +  + GI+NG+D
Sbjct:  103 YADNYLRFALLGWMGCEMACGLD---------HYWRPDIVHAHDWHAGLTCAYLAARNRP------AKSIFTVHNLAYQGLFDARHMPDLHLPREFFQVYG-LEFYG------QISYLKAGLYYADHITTVSPTYAHEI-TLPAYGYGMEGLLKSREEEGRLSGILNGVD 249          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: GLGA_SERP5 (Glycogen synthase OS=Serratia proteamaculans (strain 568) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 53/170 (31.18%), Postives = 84/170 (49.41%), Query Frame = 2
Query:   26 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNII----RKTGIXGIVNGMD 523
            Y DN  RF+LL   A E  + L+          Y    V  A+DWH  L   YL     P      A+ VF +HN+AYQG F+      L LP  F + +  ++ Y       +++++KAG+  +D +  VSP YA+E+ +  E G  ++ ++    R+  + GI+NG+D
Sbjct:  103 YSDNHRRFALLGWMACELAKGLDR---------YWRPQVVHAHDWHAGLACAYLAANGHP------ARSVFTVHNLAYQGLFSAHHVPELWLPPSFFNIYG-LEFYG------QMSFLKAGLFYADHITAVSPTYAREI-TRPEFGYGMEGLLQERQRQGRLSGILNGVD 249          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: GLGA_RHIL3 (Glycogen synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 58/171 (33.92%), Postives = 85/171 (49.71%), Query Frame = 2
Query:   17 GEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNII--RKTGIXGIVNGMD 523
            G+DY DN  RF+ L  AA E    L           +  D+V   +DW  +L   Y++  Y P     S   V  IHNIA+QG+F  E F  L LPA   ++ + I+ Y        + ++K G+  +  + TVSP YA E+ +  E G+ L+ +I  R   + GIVNG+D
Sbjct:  101 GKDYPDNWRRFAALSLAASEIAAGLMPG--------WRPDLVHT-HDWQAALTSVYMR--YYPTPELPS---VLTIHNIAFQGQFGSEIFAGLRLPAHAFTT-ESIEYYG------TVGFLKGGLKTAHAITTVSPTYADEILT-SEFGMGLEGVIASRVDDLHGIVNGID 249          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: GLGA_PSEA7 (Glycogen synthase OS=Pseudomonas aeruginosa (strain PA7) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 2
Query:   17 GEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYG----EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKS--SFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNIIR----KTGIXGIVNGMD 523
            G D+ DN LRF+ LC AA E             +G +G    +  +  ANDW ++L P Y+       G+   +  +F IHN+AYQG    +    L LP +  S  S +F         GR ++++KAGI  +  + TVS  YAQE+ +  E G  L  I++    K  + GIVNG+D
Sbjct:  134 GNDWADNHLRFARLCLAAAE------------IAGGHGAQGWQPGLVHANDWPSALTPAYMAW----NGVRTPS--LFTIHNLAYQGLCDLQCSAELGLPDEALSPESMEF--------HGR-LSFLKAGIAHAHHITTVSETYAQEITT-PEYGCGLHGILKCKVEKRQLSGIVNGID 284          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: GLGA_PELCD (Glycogen synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 53/182 (29.12%), Postives = 84/182 (46.15%), Query Frame = 2
Query:   11 GTGE-DYQDNQLRFSLLCQAALEA-------PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNL-PAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNII--RKTGIXGIVNGMD 523
            GT + DY DN  RF    +  L A       P IL+LN                  DW T L+P  L+T +     Y     +  IHN+ YQG F  E    L L PA +  + + ++ Y+      +++++K+G++ +DM+ TVS  Y  E+    + G   D I+  R   + G++NG+D
Sbjct:  100 GTSQNDYPDNAERFGFFGRGLLAALPQIGFKPEILHLN------------------DWQTGLVPALLRTEWAEDPFYAGTATMTTIHNLGYQGLFPAETVATLGLDPALY--TMEGLEYYD------QVSFLKSGLVYADMITTVSETYCAEI-QTPQMGHGFDGILHARAARLFGVLNGID 254          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: GLGA_PARDP (Glycogen synthase OS=Paracoccus denitrificans (strain Pd 1222) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 56/188 (29.79%), Postives = 86/188 (45.74%), Query Frame = 2
Query:   17 GEDYQDNQLRFSLLCQAALEA---------PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQF--KSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNII--RKTGIXGIVNGMDVQE*TP 541
            G D+ DN  RF+ LC+AA            P++L+L+                  DW   L P YL+     +   +  + +  IHNIA+QG         L LPA     S F++           +I+ +KAGI+ +D V TVSP YA+EL +  E G+ ++ ++  R     GI+NG+D+    P
Sbjct:  102 GRDWPDNPQRFAALCKAAALIAAEGVEDWRPQVLHLH------------------DWQAGLTPIYLR-----QAGVRDVRTLLTIHNIAFQGLAPAHMLSALQLPAHLFNPSGFEYWG---------RISALKAGIVFADKVSTVSPTYAEELMT-PEFGMGMEGVLADRAGDFTGILNGIDLDAWKP 256          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: GLGA2_METCA (Glycogen synthase 2 OS=Methylococcus capsulatus GN=glgA2 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 51/168 (30.36%), Postives = 80/168 (47.62%), Query Frame = 2
Query:   26 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLP-AQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQEL-CSGEEQGVELDNIIRKTGIXGIVNGMD 523
            + D+  RF+   +AA+E            +      D++   +DW T+L+P YL  +Y+P GM +  +V F IHN  +QG    +      L   ++   +D +   + P     IN MK GI+ ++ V TVSP YA E    G+  G+E    I      G+VNG+D
Sbjct:  102 FHDDIFRFAFFSRAAMEF----------LWKAGKNPDIIH-CHDWQTALVPVYLYEIYQPMGM-RHPRVCFTIHNFKHQGVTGAQVLHASGLDRPEYYFHYDRLRDNHNP---HAINLMKGGIVYANFVTTVSPRYAMEAKDQGQGFGLEPTLHIHHMKYGGVVNGID 254          
BLAST of EY660349 vs. ExPASy Swiss-Prot
Match: GLGA1_BRAJA (Glycogen synthase 1 OS=Bradyrhizobium japonicum GN=glgA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 54/178 (30.34%), Postives = 94/178 (52.81%), Query Frame = 2
Query:   14 TGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKV--VFCIHNIAYQGRFAFEDFGLLNLPAQFKSSF--DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELCSGEEQGVELDNIIR----KTGIXGIVNGMD 523
            +G D+ DN +RF+    AA E   +  L+ N      +  D++  ANDW  SL+P YL         ++ AK+  +  IHN+AYQG F  +    +  P   +S+F  D ++ Y+      +++++KAG++ +  + TVS  YA+E+ +  E G  L+ ++R       + GI+NG+D
Sbjct:   92 SGRDWPDNDIRFARFASAAAELA-MGKLDKN------WAADLIH-ANDWQASLVPAYL--------AWRGAKLPSILTIHNLAYQGLFPKDSLRRIGAP---ESAFHIDGLEFYD------QVSFLKAGLVYASHLTTVSGTYAREITTA-EFGCGLEGLLRLRSDAAELTGILNGID 243          
The following BLAST results are available for this feature:
BLAST of EY660349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
GLGA_PECCP6.588e-1130.59Glycogen synthase OS=Pectobacterium carotovorum su... [more]
GLGA_SERP58.604e-1131.18Glycogen synthase OS=Serratia proteamaculans (stra... [more]
GLGA_RHIL38.604e-1133.92Glycogen synthase OS=Rhizobium leguminosarum bv. v... [more]
GLGA_PSEA78.604e-1133.52Glycogen synthase OS=Pseudomonas aeruginosa (strai... [more]
GLGA_PELCD8.604e-1129.12Glycogen synthase OS=Pelobacter carbinolicus (stra... [more]
GLGA_PARDP8.604e-1129.79Glycogen synthase OS=Paracoccus denitrificans (str... [more]
GLGA2_METCA8.604e-1130.36Glycogen synthase 2 OS=Methylococcus capsulatus GN... [more]
GLGA1_BRAJA8.604e-1130.34Glycogen synthase 1 OS=Bradyrhizobium japonicum GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660349 ID=EY660349; Name=EY660349; organism=Citrus sinensis; type=EST; length=831bp
CCACGCGTCCGGGACTGGAGAGGACTACCAGGACAACCAACTTCGCTTCA
GCTTGTTGTGCCAGGCAGCTCTTGAAGCACCGAGAATTCTGAATCTTAAC
AGCAACAAATATTTCTCTGGACCATATGGTGAAGATGTCGTTTTTGTTGC
TAATGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATA
AGCCCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTGTATCCACAAT
ATTGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCT
TCCAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAAC
CTGTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCA
GACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTTGTTCTGG
TGAAGAACAAGGAGTAGAATTGGATAATATCATCCGTAAAACTGGCATTA
ANGGAATTGTGAACGGGATGGATGTCCAGGAGTGAACCCCTTGACTGACA
ATATATAGGTGTCAATATGATGCTTCACTGTGATGGATGCGAAGCTCTTC
TGAGGAAGCCCTCCAGCAGAAAGTGGGTGCCTGTCGATAGAATATTCTGT
CATAGGCTCATTGGTAGACTGAAGAGCAGAAGGCTCGATATTCTTGAGCT
GCATTCCCATTTCTCAAGAGATGTCAGATATAGTCCTGGACTGGCAAAAA
CCATGGAGAGCAGCTTGACAAGTTGAGAACTGTACCTGAGAAAGCAGAGA
GTACGAATTCATATTCTCTGCGCTATGAAAT
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