EY660345

Overview
NameEY660345
Unique NameEY660345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.791e-48
Identity = 93/130 (71.54%), Postives = 106/130 (81.54%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 410
            APT  DRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +GNF
Sbjct:  310 APTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 3.991e-48
Identity = 93/131 (70.99%), Postives = 108/131 (82.44%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 413
            APT  DRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEAN DA+++G+F+
Sbjct:  302 APTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.981e-47
Identity = 91/128 (71.09%), Postives = 105/128 (82.03%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSG 404
            APT  DRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVR W            L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +G
Sbjct:  305 APTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.371e-46
Identity = 91/131 (69.47%), Postives = 104/131 (79.39%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 413
            APT  DRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG AN DAI+SG+F+
Sbjct:  310 APTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.386e-38
Identity = 77/107 (71.96%), Postives = 85/107 (79.44%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 341
            APT  DRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  303 APTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 65/116 (56.03%), Postives = 76/116 (65.52%), Query Frame = 3
Query:   24 PTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAL 371
            PT  DRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR W            LVN+++      +  M +  L++YG  +V EQENVKRVQLAD YLS A L
Sbjct:  280 PTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV-AMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.005e-20
Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 3
Query:   24 PTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 353
            P   D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R++            +VNS EA P F++P  ++  L+E GN+++ EQ+ V   QL D+Y
Sbjct:  180 PNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.843e-20
Identity = 44/110 (40.00%), Postives = 69/110 (62.73%), Query Frame = 3
Query:   24 PTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 353
            P   +++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R++            +VNS E  P F++P  T+  L+E  N +V EQ+ ++  QL D+Y
Sbjct:  180 PHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289          
The following BLAST results are available for this feature:
BLAST of EY660345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA2_TOBAC1.791e-4871.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE3.991e-4870.99Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.981e-4771.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU6.371e-4669.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA6.386e-3871.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.022e-2756.03Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP6.005e-2041.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC7.843e-2040.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660345 ID=EY660345; Name=EY660345; organism=Citrus sinensis; type=EST; length=716bp
TTCTCGACCCACGCGTCCGGGCACCTACAATGGCGGACCGTATTGGTGTG
TGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAA
GCTTGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGA
GGGCCAGAGTCTATGATGATGAGGTGAGGAATTGGATCTCTGGTATTGGT
GTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAAC
ATTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTCGAGTACGGAAACA
TGATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAG
TATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGCAGATGCTATTCAGAG
TGGAAATTTCTATGGTTAGCCCCCTTGATCCTAGCTAAGAGGCCTTGATG
GGAGGCAAAGCAGCCCAGCAAATGAATGTTCCAGTTCCTGAAGGATGTAC
TGATCCTACTGCAGAAAACTTTGATCCAACTGCAAGAAGTGATGATGGAA
GCTGCCAATACACGCTTTAGGNCTTGNTTCTAGGGTTGAGAAGTGTCGCA
CTTTGCTTAGGATGTGAGATATTCAAATAATATTGTTGCATTTTCATTTT
CTTGGTAATTAAAAAGATCCCTCTATTTTTGGGTATTTCCCCNAAAAAAA
AAAAAAANNNAAAAAA
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