EY660272

Overview
NameEY660272
Unique NameEY660272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.658e-33
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRGIYA+GFE+PSA ++R I+P  KG DVI QAQ+GTGKTATF    LQ++D  L  CQ L+LAPTRELA  I+KV+ A+GD++  + HAC GGT+VRED    Q G  VVVGT
Sbjct:   32 LKPELLRGIYAYGFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFMSLECHACIGGTNVREDMKALQDGPQVVVGT 150          

HSP 2 Score: 23.0978 bits (48), Expect = 9.658e-33
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  263 EGQDXXTSYDEVYDSFDAL 319
            EGQ   ++YDE+ DSFD++
Sbjct:   13 EGQ-IESNYDEITDSFDSM 30          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 9.660e-33
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRGIYA+GFE+PSA ++R I+P     DV+ QAQ+GTGKTATF   +LQ++D  L QCQ L+LAPTRELA  I+KV+ ALGD +  + HAC GGT VR+D    QAG HVVVGT
Sbjct:   26 LKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGT 144          

HSP 2 Score: 22.3274 bits (46), Expect = 9.660e-33
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  281 TSYDEVYDSFD 313
            T+YDEV D+FD
Sbjct:   12 TNYDEVIDTFD 22          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.662e-33
Identity = 70/119 (58.82%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRG+YA+GFE+PSA ++R I+P  KG DVI QAQ+GTGKTATF    LQ++D  L  CQ L+LAPTRELA  I+KV+ A+GD++  + HAC GG SVRED    Q G  VVVGT
Sbjct:   32 LRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGT 150          

HSP 2 Score: 25.0238 bits (53), Expect = 9.662e-33
Identity = 12/28 (42.86%), Postives = 17/28 (60.71%), Query Frame = 2
Query:  263 EGQDXXTSYDEVYDSFDALGTAGKPFEG 346
            EGQ   ++YDE+ DSFDA+    +   G
Sbjct:   13 EGQ-IESNYDEITDSFDAMNLRAELLRG 39          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.638e-32
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRGIYA+GFE+PSA ++R I+P  KG DVI QAQ+GTGKTATF    LQ+LD  +  CQ L+LAPTRELA  I+KV+ A+GD++  + HAC GGT+VRED    Q G  VVVGT
Sbjct:   32 LKPELLRGIYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGT 150          

HSP 2 Score: 23.0978 bits (48), Expect = 1.638e-32
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  263 EGQDXXTSYDEVYDSFDAL 319
            EGQ   ++YDE+ DSFD++
Sbjct:   13 EGQ-IESNYDEITDSFDSM 30          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A_CHAGB (ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.638e-32
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+  LLRGIYA+GFE+PSA ++R I+P  KG DVI QAQ+GTGKTATF   +LQ++D  +  CQ L+LAPTRELA  I+KV+ A+GD++  + HAC GGTSVR+D    Q G  V+VGT
Sbjct:   31 LKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPTVKSCQALILAPTRELAQQIQKVVIAIGDFMNIECHACIGGTSVRDDMKALQDGPQVIVGT 149          

HSP 2 Score: 23.0978 bits (48), Expect = 1.638e-32
Identity = 13/37 (35.14%), Postives = 17/37 (45.95%), Query Frame = 2
Query:  236 TKKNEPXATEGQDXXTSYDEVYDSFDALGTAGKPFEG 346
            T K      EGQ   ++YDE  DSFD +    +   G
Sbjct:    3 TDKGLEDVPEGQ-IESNYDETVDSFDDMNLKSELLRG 38          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.118e-32
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA ++R I    KG DVI Q+Q+GTGKTATFC  +LQ LD  + + Q L+LAPTRELAG I+KV+ ALGDY+  + HAC GGT+V ED      G HVV GT
Sbjct:   49 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 167          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.118e-32
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA ++R I    KG DVI Q+Q+GTGKTATFC  +LQ LD  + + Q L+LAPTRELAG I+KV+ ALGDY+  + HAC GGT+V ED      G HVV GT
Sbjct:   40 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 158          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.118e-32
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVREDKGICQAGGHVVVGT 680
            L+E+LLRGIYA+GFEKPSA ++R I    KG DVI Q+Q+GTGKTATFC  +LQ LD  + + Q L+LAPTRELAG I+KV+ ALGDY+  + HAC GGT+V ED      G HVV GT
Sbjct:   49 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 167          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.766e-32
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVR-EDKGICQAGGHVVVGT 680
            L E+LLRGIYA+GFEKPSA ++R I+P  KG DVI QAQ+GTGKTATF   ILQQ++  L   Q LVLAPTRELA  I+KV+ ALGDY+G   HAC GGT+VR E + +     H++VGT
Sbjct:   31 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGT 150          
BLAST of EY660272 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.766e-32
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = 3
Query:  324 LQENLLRGIYAFGFEKPSASEERGIVPFCKGLDVIQQAQAGTGKTATFCSGILQQLDYGLVQCQGLVLAPTRELAGLIEKVMRALGDYLGGKGHACGGGTSVR-EDKGICQAGGHVVVGT 680
            L E+LLRGIYA+GFEKPSA ++R I+P  KG DVI QAQ+GTGKTATF   ILQQ++  L   Q LVLAPTRELA  I+KV+ ALGDY+G   HAC GGT+VR E + +     H++VGT
Sbjct:   39 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGT 158          
The following BLAST results are available for this feature:
BLAST of EY660272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
IF4A_ASPCL9.658e-3359.66ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
IF4A_SCHPO9.660e-3359.66ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
IF4A_AJECN9.662e-3358.82ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
IF4A_NEOFI1.638e-3259.66ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_CHAGB1.638e-3257.98ATP-dependent RNA helicase eIF4A OS=Chaetomium glo... [more]
IF4A3_XENTR2.118e-3260.50Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_DANRE2.118e-3260.50Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
I4A3A_XENLA2.118e-3260.50Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
IF4A1_RABIT2.766e-3260.83Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A1_PANTR2.766e-3260.83Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660272 ID=EY660272; Name=EY660272; organism=Citrus sinensis; type=EST; length=933bp
TGTGGTACGCCTGAGGNACTGGTCCGGATTCTTTCANCAGGGGGGCGNCC
GCCACGGCGTGACAAGAGGAGGGTGTNAACCCNAGGAACAANANGCAGCA
AAAGAAAGAGGTGTGTCTCCAAAGAGAGAGGGAAAACCAACNCGNNCNCG
CGAAGANAANCACCAGCAGCAAAGCAGGGCAGAGATGGCTGGAAAGGCAC
CCGAAGGANCACAACCCGAAGCACGNCAGNAGGACACCAAGAAGAACGAA
CCGGNCGCGACGGAGGGGCAAGACCNCNNCACTTCTTATGATGAAGTTTA
TGACAGTTTTGATGCATTGGGTACTGCAGGAAAACCTTTTGAGGGGAATC
TATGCTTTTGGGTTTGAGAAGCCCTCTGCTAGTGAGGAAAGGGGAATTGT
TCCCTTCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGGCTGGAACTG
GGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGG
CTTGTCCAATGTCAGGGCCTGGTATTGGCACCCACTAGGGAACTAGCTGG
ACTGATTGAGAAAGTAATGAGGGCACTTGGCGATTATCTTGGGGGCAAGG
GTCATGCTTGTGGTGGTGGGACAAGTGTTCGCGAGGATAAGGGGATTTGT
CAAGCTGGGGGTCATGTGGTTGTTGGGACTCCTGGGGCGAGGGGTTGAAA
TGCTGCGCCGTGAGGTTTTAGCGCCCGGATTAATTTAACATGGTTGGACT
GGATGGGAGGTGATGAAAGGCTGTTCCCGGGTTGTAGGGTCGGATTTTTG
ATATTGTTGCGGAGGGTTGGGGGTAAGGTGAGGGGGGGGTCTCTCTGGGA
AATGGGTTCGGGGGGCCGGGGGATTGAGGGGAGTTGATGGAAAAGCTGGA
AGGATTTGGGGTAATGGGGGGAAATGCCCGTAG
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