EY660270

Overview
NameEY660270
Unique NameEY660270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY660270 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.275e-24
Identity = 58/154 (37.66%), Postives = 81/154 (52.60%), Query Frame = 1 
Query:   79 EQRVNLWFDPAADSHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQA-LTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECL 531
            E+R NLWFDP  D H Y+ILW+  HI+FYVD+VPIR  K +      FP  +PM +YST+W+   WAT GG   +++  AP+ + + D  + GC V       S      +     + +T  +  +    R  HM Y YC D  RY V   EC+
Sbjct:  139 EERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECV 291
[Close]
BLAST of EY660270 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.563e-21
Identity = 57/152 (37.50%), Postives = 80/152 (52.63%), Query Frame = 1 
Query:   79 EQRVNLWFDPAADSHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP--GPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 528
            +QR  LWFDP  D H Y+ LWN + +VFYVDD PIRVY  +    +P  Q M +  ++         G +  ID  + P+ A ++   IEGC     G   C ++P  WW   N + L++ E   Y   R  ++ YDYC+D+ RYP  P EC
Sbjct:  125 DQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSV-------QNGSI--IDPKQMPYIAKFQASKIEGCKTEFMGIDKC-TDPKFWW---NRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQEC 263
The following BLAST results are available for this feature:
BLAST of EY660270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH28_ARATH8.275e-2437.66Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH8.563e-2137.50Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660270 ID=EY660270; Name=EY660270; organism=Citrus sinensis; type=EST; length=947bp
TCTGGTACCCTGCGGTACCTCGTCCGGAATTCCTTCAACACACAGGTGTC
CGATCTATGCTTTGCAAAAAAAGATTTTGAACAGAGAGTGAACCTCTGGT
TTGACCCTGCTGCAGACTCCCACCTTTACACAATTCTCTGGAACCATCAC
CATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAAACAG
TGGAAGGGCTCCATTTCCAATGAACCAACCCATGGGGGTGTATTCAACGC
TGTGGGAAGCAGATGACTGGGCAACAAGAGGTGGTCTAGAGAAAATAGAT
TGGAGCAAAGCTCCTTTTTATGCTTATTACAGAGACTTTGATATTGAGGG
CTGCCCAGTTCCTGGACCAGCAAACTGTGCCTCGAACCCAGGTAACTGGT
GGGAGGCAAATAATTATCAAGCCCTCACCGCCATGGAAGCAAGAAGATAC
AGATGGGTTCGTCTCAACCACATGATCTATGATTATTGCACTGATAAATC
AAGATACCCAGTACCCCCACCGGAATGCCTTGCCGGCATATAAATTCAAC
CCGCCAATTAATTAAGCAGTTGGACGGGACTCCATATCCGGATCATATCA
TGTATATTACTTCACGTACACGTCCTTTGTATTATTCCCTATTCGTGTGA
AAAGACTTATACGCATTTCAAGGGGAGGGGCGGGAAGGGGAAAAAAACAT
TGGGGGGCTTTTTAATGTTATTTTGGGGAGGGGGAAATATGTGGGGTTTC
CTGGTCTGCCTTGGCCCTAAATTAAGCCTCGATTTGGATGCCACGTATTT
TTGTGCCATTAAAAGTTTCTTTCAAATTGGGAAAAAAAAAAAAAAAAAGC
CGGCGCGCTCTTAAAGGACCAAGCTTTACCACCCCGTGCATTGCCAGCTA
TTACCCTCTTAAAGTGGGCCCCTAAATTCAATTCACTGGGCCGCCTT
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