EY660268

Overview
NameEY660268
Unique NameEY660268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660268 vs. ExPASy Swiss-Prot
Match: FA50A_DANRE (Protein FAM50A OS=Danio rerio GN=fam50a PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.607e-19
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 3
Query:  339 KLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRYEPLQITYSYWDGAGHRRVIQGR*GDTIGEFLRAVQQQLALEFREIRNNVRGKFALCLGRSYHPSYTQFL*AYC*QSQGKRGPLFHFDVHKDVRTIADATIEK 770
            KLGK+P V+TSFLPD                        I+ E ++IT+SYWDG+GHR+ ++ + G+TI +FL+   + L  +F E+R+               P +  F      +++GK GPLF+FDVH D+R + DAT+EK
Sbjct:  157 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWERKQEKIKSEEIEITFSYWDGSGHRKTVKMKKGNTIQQFLQRALEVLRKDFSELRSAGVEHLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDIRLVNDATVEK 300          
BLAST of EY660268 vs. ExPASy Swiss-Prot
Match: FA50B_MACFA (Protein FAM50B OS=Macaca fascicularis GN=FAM50B PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.975e-19
Identity = 51/143 (35.66%), Postives = 77/143 (53.85%), Query Frame = 3
Query:  342 LGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRYEPLQITYSYWDGAGHRRVIQGR*GDTIGEFLRAVQQQLALEFREIRNNVRGKFALCLGRSYHPSYTQFL*AYC*QSQGKRGPLFHFDVHKDVRTIADATIEK 770
            LGK+P V+TSFLPD                        ++ E +++T+SYWDG+GHRR ++ R G+T+ +FL+   Q    +F E+R+    +          P Y  F      +++GK  PLF+FDVH DVR ++DAT+EK
Sbjct:  142 LGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKVKDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGQRKDFLELRSAGVEQLMFIKEDLILPHYHTFYDFIIAKARGKSRPLFNFDVHDDVRLLSDATMEK 284          
BLAST of EY660268 vs. ExPASy Swiss-Prot
Match: FAM50_DROPS (Protein FAM50 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA11514 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.958e-18
Identity = 51/148 (34.46%), Postives = 79/148 (53.38%), Query Frame = 3
Query:  327 LAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRYEPLQITYSYWDGAGHRRVIQGR*GDTIGEFLRAVQQQLALEFREIRNNVRGKFALCLGRSYHPSYTQFL*AYC*QSQGKRGPLFHFDVHKDVRTIADATIEK 770
            + + K+ K+P V+TSFLPD                        ++ E + IT+SYWDG+GHRR +Q + G++I +FL+   + L  EF E++  +  +          P +  F      +++GK GPLF FDVH DVR I+DA++EK
Sbjct:  163 IKKKKICKNPDVDTSFLPDREREEQENRLRETLRQEWVMQQAELKDEDISITFSYWDGSGHRRNVQMKKGNSIYQFLQKCLELLRKEFIELKTVMADQLMYVKEDLILPHHYSFYDFIVTKARGKSGPLFQFDVHDDVRMISDASVEK 310          
BLAST of EY660268 vs. ExPASy Swiss-Prot
Match: FAM50_DROME (Protein FAM50 homolog OS=Drosophila melanogaster GN=CG12259 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.565e-17
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  327 LAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRYEPLQITYSYWDGAGHRRVIQGR*GDTIGEFLRAVQQQLALEFREIRNNVRGKFALCLGRSYHPSYTQFL*AYC*QSQGKRGPLFHFDVHKDVRTIADATIEK 770
            + + K+ K+P V+TSFLPD                        ++ E + IT+SYWDG+GHRR +  + G++I +FL+   + L  EF E++  +  +          P +  F      +++GK GPLF FDVH DVR I+DA++EK
Sbjct:  164 IKKKKICKNPDVDTSFLPDREREEQENRLREQLRQEWVMQQAELKDEDISITFSYWDGSGHRRNVLMKKGNSIYQFLQKCLELLRKEFIELKTVMADQLMYVKEDLILPHHYSFYDFIVTKARGKSGPLFQFDVHDDVRMISDASVEK 311          
BLAST of EY660268 vs. ExPASy Swiss-Prot
Match: FAM50_DICDI (Protein FAM50 homolog OS=Dictyostelium discoideum GN=fam50 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.350e-17
Identity = 53/142 (37.32%), Postives = 70/142 (49.30%), Query Frame = 3
Query:  345 GKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRYEPLQITYSYWDGAGHRRVIQGR*GDTIGEFLRAVQQQLALEFREIRNNVRGKFALCLGRSYHPSYTQFL*AYC*QSQGKRGPLFHFDVHKDVRTIADATIEK 770
            GKDP+V T FLPD                        I+ E  +ITYS+WDG+GHRR ++   G TI  FL   ++    EF+E+R     K          P    F      +++GK GPLF FDVH+DVR + DAT+EK
Sbjct:  173 GKDPSVNTDFLPDIEREELEKLEREKLAKEWLDQQERIKSEEFEITYSFWDGSGHRRSMKCSKGTTIERFLENARK----EFKELRGVSVDKLMFIKEDIIIPHNYSFYDLMLSKARGKSGPLFRFDVHEDVRLVNDATVEK 310          
BLAST of EY660268 vs. ExPASy Swiss-Prot
Match: FAM50_ANOGA (Protein FAM50 homolog OS=Anopheles gambiae GN=AGAP002062 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.838e-16
Identity = 45/144 (31.25%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  339 KLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRYEPLQITYSYWDGAGHRRVIQGR*GDTIGEFLRAVQQQLALEFREIRNNVRGKFALCLGRSYHPSYTQFL*AYC*QSQGKRGPLFHFDVHKDVRTIADATIEK 770
            K+ K+P V+TSFLPD                        ++ + + IT+SYWDG+GHR+ +  + G++I +FL+   + L  +F E++  +  +          P +  F      +++GK GPLF+FDV+ D+R I+DA++EK
Sbjct:  169 KIRKNPDVDTSFLPDREREERDNRLREELRQEWAMKQATLKDQEITITFSYWDGSGHRKSVAMKKGNSIYQFLQKCLEMLRKDFSELKTVMADQLMYVKEDLILPHHYTFYDFIVTKARGKSGPLFNFDVYDDIRMISDASVEK 312          
BLAST of EY660268 vs. ExPASy Swiss-Prot
Match: FAM50_AEDAE (Protein FAM50 homolog OS=Aedes aegypti GN=AAEL010045 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 46/144 (31.94%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  339 KLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRYEPLQITYSYWDGAGHRRVIQGR*GDTIGEFLRAVQQQLALEFREIRNNVRGKFALCLGRSYHPSYTQFL*AYC*QSQGKRGPLFHFDVHKDVRTIADATIEK 770
            K+ K+P V+TSFLPD                        ++ + + IT+SYWDG+GHR+ +  + G++I +FL+   + L  EF E++  +  +          P +  F      +++GK GPLF FDV  D+R I+DA++EK
Sbjct:  158 KIKKNPDVDTSFLPDREREEMDNKLREELRQEWAMKQATLKDQEIPITFSYWDGSGHRKCVTMKKGNSIYQFLQKCLEMLRKEFSELKTVMADQLMYVKEDLILPHHYTFYDFIVTKARGKSGPLFSFDVKDDIRMISDASVEK 301          
BLAST of EY660268 vs. ExPASy Swiss-Prot
Match: FAM50_CAEEL (Protein FAM50 homolog OS=Caenorhabditis elegans GN=C47E8.4 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.611e-11
Identity = 42/147 (28.57%), Postives = 67/147 (45.58%), Query Frame = 3
Query:  327 LAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRYEPLQITYSYWDGAGHRRVIQGR*GDTIGEFLRAVQQQLALEFREIRNNVRGKFALCLGRSYHPSYTQFL*AYC*QSQGKRGPLFHFDVHKDVRTIADATIE 767
            + + ++G DPTV+TSFLPD                         + E + + Y+YWDG+ HR+ ++ + G+TI + L    + L  EF E+++               P +  F      ++ GK GPLF FD   DVR   DA ++
Sbjct:  134 IPKKRVGMDPTVDTSFLPDKEREEFLRKKKESLAAEWRVKQDAEKNEEITVAYAYWDGSSHRKNMKIKKGNTISQCLGRAIEALKKEFTELKSCTAENLMFVKEDLIIPHFYTFQDFIVTKAMGKTGPLFVFDSASDVRIRQDAALD 280          
BLAST of EY660268 vs. ExPASy Swiss-Prot
Match: FAM50_CAEBR (Protein FAM50 homolog OS=Caenorhabditis briggsae GN=CBG04561 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 42/143 (29.37%), Postives = 64/143 (44.76%), Query Frame = 3
Query:  339 KLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRYEPLQITYSYWDGAGHRRVIQGR*GDTIGEFLRAVQQQLALEFREIRNNVRGKFALCLGRSYHPSYTQFL*AYC*QSQGKRGPLFHFDVHKDVRTIADATIE 767
            ++G DPTV+TSFLPD                         + E + + Y+YWDG+ HR+ ++ + G+TI + L    + L  EF E++                P +  F      ++ GK GPLF FD   DVR   DA ++
Sbjct:  138 RVGMDPTVDTSFLPDKEREEFLRKKKEELAAEWRVKQNTEKNEEITVAYAYWDGSSHRKNMKVKKGNTISQCLARAIEALKKEFTELKACTPENLMFVKEDLIIPHFYTFQDFIVTKAMGKTGPLFVFDSASDVRIRQDAALD 280          
The following BLAST results are available for this feature:
BLAST of EY660268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
FA50A_DANRE1.607e-1936.11Protein FAM50A OS=Danio rerio GN=fam50a PE=2 SV=1[more]
FA50B_MACFA7.975e-1935.66Protein FAM50B OS=Macaca fascicularis GN=FAM50B PE... [more]
FAM50_DROPS3.958e-1834.46Protein FAM50 homolog OS=Drosophila pseudoobscura ... [more]
FAM50_DROME2.565e-1733.78Protein FAM50 homolog OS=Drosophila melanogaster G... [more]
FAM50_DICDI3.350e-1737.32Protein FAM50 homolog OS=Dictyostelium discoideum ... [more]
FAM50_ANOGA4.838e-1631.25Protein FAM50 homolog OS=Anopheles gambiae GN=AGAP... [more]
FAM50_AEDAE6.319e-1631.94Protein FAM50 homolog OS=Aedes aegypti GN=AAEL0100... [more]
FAM50_CAEEL1.611e-1128.57Protein FAM50 homolog OS=Caenorhabditis elegans GN... [more]
FAM50_CAEBR3.588e-1129.37Protein FAM50 homolog OS=Caenorhabditis briggsae G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660268 ID=EY660268; Name=EY660268; organism=Citrus sinensis; type=EST; length=945bp
TTGCTCGACCCACGCGTCCGGGCCAGCCCGTGGCTCTCCAGTTTGGTTCA
AGTACCTCCGAGATTCTAGAAACTGCGTTTAAGAATGTTTCCCCCGGTTT
AGTCACCAGAGAGGAATACGTTGAGAAGAGGGTTAATATTCGGAACAAGA
TTGAAGAGGAAGAAAAGGAGAAGCTTCAGAAGCTACTACAAGAGGAAGAG
GAGCTGCAATTGGAAAAGCGTAAAAAGCGAAAGATTAAGGGAAATTCTCG
ATTATCATTTGCTGATGATTTTGAGAGTGAAAATGAAGAGGAGAATGGAG
AAAGTGAAAATTTGAAAACAAAGAGGCTTGCGCAAGCGAAATTGGGAAAA
GATCCAACAGTGGAGACTAGCTTTTTGCCTGACAGTGAGAGAGAGGCAGA
GGAGCAATCTGAGCGTGAACGGTTGCAGCGACAGTGGCTTCGTGAGCAGG
AGCAAATTCGATATGAACCCCTTCAAATCACTTATAGTTATTGGGATGGA
GCAGGCCATAGACGAGTTATCCAGGGTCGGTAGGGTGATACAATAGGAGA
GTTTCTTCGGGCTGTTCAACAACAACTTGCACTTGAGTTTCGAGAAATCC
GAAACAACGTCAGGGGAAAATTTGCTTTATGTTTAGGAAGATCTTATCAT
CCCTCATACACACAGTTTTTATGAGCTTATTGTTAACAAAGCCAGGGAAA
AAGGGGACCGCTTTTTCACTTTGATGTTCACAAGGATGTTCGGACGATTG
CTGATGCCACTATAGAAAAGATGATTCCATGCTGGGAAAATTGGGGAAAG
GACTGGATGAAAAAAAAAAAAATTTCCTCCTGCTTCTCGAGGGAGGTTTT
GACCAACAAAAATTGGGGGCTACCCCCTCCTGGGGTTTGTCAGCCAGTGT
TGGAAATAATTTTCTAAAACATTGGTTTTTTCGTGGCGGAATAAT
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