EY660265

Overview
NameEY660265
Unique NameEY660265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660265 vs. ExPASy Swiss-Prot
Match: ABCG5_RAT (ATP-binding cassette sub-family G member 5 OS=Rattus norvegicus GN=Abcg5 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 43/155 (27.74%), Postives = 86/155 (55.48%), Query Frame = 2
Query:  125 SGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 589
            +G   +++ F     Y  Q+D+   ++TV E+L Y+A L L     ++     +E ++  + L+ +   ++G     G+S+ +R+R++IA +L+ +P ++ +DEPT+GLD   A  ++  +       R V+ TIHQP  ++F  FD++ ++  G
Sbjct:  117 NGCELRRDQFQDCVSYLLQSDVFLSSLTVRETLRYTAMLALRSS-SADFYDKKVEAVLTELSLSHVADQMIGNYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANHIVLLLVELARRNRIVIVTIHQPRSELFHHFDKIAILTYG 270          
BLAST of EY660265 vs. ExPASy Swiss-Prot
Match: AB3G_ARATH (ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 49/142 (34.51%), Postives = 83/142 (58.45%), Query Frame = 2
Query:  167 GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 589
            G+ E+      ++TV E L YSA L+LP  +    +R  +E+ ++ + L+     L+G    + GL + +R+R++IA ELV  P I+F+DEP   LD+ +A ++M T++     G T+V TI+Q S ++F  FD + L+  G
Sbjct:  193 GFVERETQLIGSLTVREFLYYSALLQLPGFLFQ--KRSVVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLLSNG 332          
The following BLAST results are available for this feature:
BLAST of EY660265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ABCG5_RAT8.372e-1527.74ATP-binding cassette sub-family G member 5 OS=Ratt... [more]
AB3G_ARATH3.181e-1434.51ABC transporter G family member 3 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660265 ID=EY660265; Name=EY660265; organism=Citrus sinensis; type=EST; length=889bp
TCTGGTACCCTGCGGTCCGGTCCGGAATTCCTTCTAAACCACGTGTCCGG
TGCTGGTATACCACTTAAATGGATGTTCTTGCGGGCAGGAAAACAGGCGG
ATATATTACTGGGTTACTCCCCAATCTGGTTACCCAAAGAAGCAAGAAAC
ATTTGCTCGTATTTCTGGATACTGTGAGCAAAATGACATCCACTCTCCTA
ATGTCACTGTGTATGAATCCTTGCTCTACTCAGCCTGGCTCCGTTTACCA
CCTGATGTTGATTCTGAAACCAGAAGGATGTTTCTAGAGGAAATCATGGA
GCTTGTGGAGTTGAATCCATTGAGACAATCACTTGTTGGCTTGCCTGGTG
TAAGTGGTCTGTCGACAGAGCAGCGTAAGAGGCTTACCATTGCAGTTGAG
CTCGTGGCTAACCCATCCATCATATTTATGGATGAGCCAACTTCAGGGCT
TGATGCAAGAGCTGCTGCAATTGTTATGAGAACTGTGAGAAACACGGTGG
ACACTGGAAGGACGGTAGTATGCACCATCCACCAACCAAGCATCGATATA
TTTGAAGCTTTTGATGAGCTATTTTTAATGAAGCGAGGAGGATATGAGAT
TTATGTTGGGCCATTGGGTCGCCATTCTAGCCATCTTATCAGTTATTTCG
AAGCTATTCCTGGAGTCAATAAAATAAAAGATGGTTACAATCCGGCAACT
TGGATGTTGGAAGTTAGTTCTTCATCTCAAGAATTAGCTCTGGGNGTTGA
TTTTACTGATATTTACAAAGGCTCANAACTGTATATGAGAAACAAAGCAC
TCATTGAAGAATTAAGCAAGCCTGCTCCAAGTTCAAGAGACTCTATTTTT
CTACTCAGGACTCACAGNCATTTTTCACCCATGTATGGC
back to top