EY660260

Overview
NameEY660260
Unique NameEY660260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660260_ssr127 microsatellite EY660260_ssr127:127..138. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1570 contig Csv1_Contig1570:81..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.171e-86
Identity = 158/182 (86.81%), Postives = 174/182 (95.60%), Query Frame = 1
Query:  148 MAGLA-EGSQFDARQFDARMNDLLGS-DGQDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            MAG+A EGSQFDA+ +D++M +LL   + ++FFTSYDEV+++FD MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL+SGVHVVVGTPGRVFD++R+QSLRPD
Sbjct:    1 MAGMAPEGSQFDAKNYDSKMQELLSQGETEEFFTSYDEVHESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDIVRRQSLRPD 182          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.171e-86
Identity = 160/181 (88.40%), Postives = 172/181 (95.03%), Query Frame = 1
Query:  148 MAGLA-EGSQFDARQFDARMNDLLGSDGQDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            MAGLA EGSQFD +Q+D +M ++L    +DFFTSYD+V ++FD+MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL+SGVHVVVGTPGRVFDMLR+QSLRPD
Sbjct:    1 MAGLAPEGSQFDDKQYDKKMQEILT---EDFFTSYDDVCESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLRPD 178          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.053e-85
Identity = 158/182 (86.81%), Postives = 173/182 (95.05%), Query Frame = 1
Query:  148 MAGLA-EGSQFDARQFDARMNDLLGS-DGQDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            MAG+A EGSQFDA+ +D++M +LL   + ++FFTSYDEV+++FD MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY +VECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL+SGVHVVVGTPGRVFDMLR+QSLRPD
Sbjct:    1 MAGMAPEGSQFDAKHYDSKMQELLNQGETEEFFTSYDEVHESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYAVVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLRPD 182          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A2_ARATH (Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana GN=TIF4A-2 PE=1 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.375e-85
Identity = 160/182 (87.91%), Postives = 172/182 (94.51%), Query Frame = 1
Query:  148 MAGLA-EGSQFDARQFDARMNDLLGSDGQD-FFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            MAG A EG+QFD RQFD R+N++L  DGQD FFTSYDEV+++FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDY L++CQALVLAPTRELAQQIEKVMRALGDY GVKVHACVGGTSVREDQRIL +GVHVVVGTPGRVFDMLR+QSLRPD
Sbjct:    1 MAGSAPEGTQFDTRQFDQRLNEVL--DGQDEFFTSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 180          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.423e-84
Identity = 156/182 (85.71%), Postives = 173/182 (95.05%), Query Frame = 1
Query:  148 MAGLA-EGSQFDARQFDARMNDLLGSDGQD-FFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            MAG A EG+QFDARQFD ++N++L  +GQD FFTSYD+V+++FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLD+ L++CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL +GVHVVVGTPGRVFDML++QSLR D
Sbjct:    1 MAGSAPEGTQFDARQFDQKLNEVL--EGQDEFFTSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRAD 180          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A3_ARATH (Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana GN=TIF4A-3 PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.332e-80
Identity = 148/182 (81.32%), Postives = 167/182 (91.76%), Query Frame = 1
Query:  148 MAGLA-EGSQFDARQFDARMNDLLGSDGQD-FFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            MAG+A +G+Q+D RQFD +MN +LG +G++ F+T+YDEV D+FDAM LQ +LLRGIYAYGFEKPSAIQQRGI+PFCKGLDVIQQAQSGTGKTATFCSG+LQQLD  LV+CQALVLAPTRELAQQIEKVMRALGDYLGVK  ACVGGTSVREDQR+L SGVHVVVGTPGRVFD+LR+QSLR D
Sbjct:    1 MAGMASDGTQYDPRQFDTKMNAILGEEGEETFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRAD 182          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.534e-52
Identity = 100/147 (68.03%), Postives = 120/147 (81.63%), Query Frame = 1
Query:  241 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLR 681
            +++ EVYD FD M L+E LLRGIY YGFEKPSAIQQR I+P  +G DVI QAQSGTGKTATF   ILQQ+D  + ECQAL+LAPTRELA QI++V+ ALG+Y+ V  HAC+GGT+VRED RIL SG HVVVGTPGRV+DM+ ++ LR
Sbjct:   23 STWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDMINRKVLR 169          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.419e-51
Identity = 100/149 (67.11%), Postives = 117/149 (78.52%), Query Frame = 1
Query:  241 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            ++YDE+ + F+A+ L+ +LLRGI+AYGFEKPSAIQQRGI P   G D I QAQSGTGKTATF    LQ++DY L  CQ L+LAPTRELAQQI+KV  ALGDY  ++ HACVGGTSVR+D   L SGVH+VVGTPGRVFDML K  LR D
Sbjct:   24 SNYDEIVECFEALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKLKSGVHMVVGTPGRVFDMLDKGYLRVD 172          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_ASPOR (ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae GN=tif1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.436e-50
Identity = 100/164 (60.98%), Postives = 125/164 (76.22%), Query Frame = 1
Query:  196 ARMNDLLGSDGQDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            +R+  L  S GQ   T+YDE+ D+FDAM L+  LLRG+YAYGFE+PSAIQQR I P  KG DVI QAQSGTGKTATF    LQ+LD  +  CQAL+LAPTRELAQQI+KV+ A+GD++ +  HAC+GGT+VRED + L  G  VVVGTPGRV DM++++ L+ D
Sbjct:   27 SRLTRLFQSTGQ-IETNYDEITDSFDAMELKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGEGPEVVVGTPGRVHDMIQRRVLKTD 189          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.449e-50
Identity = 94/150 (62.67%), Postives = 121/150 (80.67%), Query Frame = 1
Query:  241 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPDT 690
            ++YDE  D+FD M L+  LLRG+YAYGFE+PSAIQQR I+P  KG DVI QAQSGTGKTATF   +LQ+LD  + +CQAL+LAPTRELAQQI+KV+ A+GD++ V+ HAC+GGTSVR+D + L  G  VVVGTPGRV DM++++ L+ D+
Sbjct:   18 SNYDETVDSFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDS 167          
The following BLAST results are available for this feature:
BLAST of EY660260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_WHEAT6.171e-8686.81Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF4A_MAIZE6.171e-8688.40Eukaryotic initiation factor 4A OS=Zea mays PE=2 S... [more]
IF4A1_ORYSJ1.053e-8586.81Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF4A2_ARATH1.375e-8587.91Eukaryotic initiation factor 4A-2 OS=Arabidopsis t... [more]
IF4A1_ARATH4.423e-8485.71Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
IF4A3_ARATH1.332e-8081.32Eukaryotic initiation factor 4A-3 OS=Arabidopsis t... [more]
IF4A_DROME1.534e-5268.03Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
IF4A_CRYPV8.419e-5167.11Eukaryotic initiation factor 4A OS=Cryptosporidium... [more]
IF4A_ASPOR1.436e-5060.98ATP-dependent RNA helicase eIF4A OS=Aspergillus or... [more]
IF4A_SCLS12.449e-5062.67ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660260 ID=EY660260; Name=EY660260; organism=Citrus sinensis; type=EST; length=703bp
TTCCTCAACCCACGCGTCCGTGAACTCCGTCTCCTCAAAGCAAACAACTA
AACTCAGAGATCCGAGGAGTTCGGGGAAAACCCTATTCCACCCCCTAGTC
TTTAAAATCAAACAAGCTTCCACCTTTCATCATCATCACTATCAGTCATG
GCTGGTTTGGCTGAAGGATCCCAGTTTGATGCCCGTCAATTTGATGCTAG
AATGAATGATTTACTTGGAAGTGATGGACAAGATTTCTTCACATCGTATG
ATGAGGTTTATGATACTTTTGATGCTATGGGATTGCAAGAGAATCTTCTT
AGAGGCATTTATGCATATGGTTTTGAGAAGCCTTCTGCCATTCAGCAAAG
GGGGATTGTTCCATTCTGCAAGGGACTTGATGTAATTCAACAAGCACAGT
CTGGAACTGGAAAAACTGCAACTTTTTGCTCCGGAATTTTGCAGCAGCTT
GATTATGGTTTAGTTGAATGCCAAGCATTGGTTCTTGCTCCAACTAGGGA
ACTGGCGCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTG
GTGTCAAAGTGCATGCATGTGTAGGTGGAACCAGTGTCCGTGAAGATCAA
CGCATTCTTTCAAGCGGTGTACATGTTGTAGTTGGTACACCTGGTCGTGT
GTTTGACATGTTGCGGAAGCAATCTCTTCGCCCAGATACATCANGATCTT
TGT
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