EY660260

Overview
NameEY660260
Unique NameEY660260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660260_ssr127 microsatellite EY660260_ssr127:127..138. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1570 contig Csv1_Contig1570:81..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.074e-49
Identity = 101/151 (66.89%), Postives = 120/151 (79.47%), Query Frame = 1
Query:  232 DFFTSYD-EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLR 681
            +F TS + +V  TFD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + E QAL+LAPTRELA QI+KV+ ALGDY+ V+ H+C+GGT+V ED R L  G HVV GTPGRVFDM+R++SLR
Sbjct:   22 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLR 172          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.074e-49
Identity = 103/169 (60.95%), Postives = 126/169 (74.56%), Query Frame = 1
Query:  193 DARMNDLLGSDGQD----FFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILSSGVHVVVGTPGRVFDMLRKQSLRP 684
            D+R  D  G DG +      ++++E+ D+FD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML ++ L P
Sbjct:    6 DSRSRDN-GPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.074e-49
Identity = 103/169 (60.95%), Postives = 126/169 (74.56%), Query Frame = 1
Query:  193 DARMNDLLGSDGQD----FFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILSSGVHVVVGTPGRVFDMLRKQSLRP 684
            D+R  D  G DG +      ++++E+ D+FD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML ++ L P
Sbjct:    6 DSRSRDN-GPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.074e-49
Identity = 103/169 (60.95%), Postives = 126/169 (74.56%), Query Frame = 1
Query:  193 DARMNDLLGSDGQD----FFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILSSGVHVVVGTPGRVFDMLRKQSLRP 684
            D+R  D  G DG +      ++++E+ D+FD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML ++ L P
Sbjct:    6 DSRSRDN-GPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.074e-49
Identity = 103/169 (60.95%), Postives = 126/169 (74.56%), Query Frame = 1
Query:  193 DARMNDLLGSDGQD----FFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILSSGVHVVVGTPGRVFDMLRKQSLRP 684
            D+R  D  G DG +      ++++E+ D+FD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML ++ L P
Sbjct:    6 DSRSRDN-GPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.074e-49
Identity = 103/169 (60.95%), Postives = 126/169 (74.56%), Query Frame = 1
Query:  193 DARMNDLLGSDGQD----FFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILSSGVHVVVGTPGRVFDMLRKQSLRP 684
            D+R  D  G DG +      ++++E+ D+FD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML ++ L P
Sbjct:    6 DSRSRDN-GPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.708e-49
Identity = 94/149 (63.09%), Postives = 118/149 (79.19%), Query Frame = 1
Query:  241 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            ++YDE  D+FDAM L+  LLRG+YAYGFE+PSAIQQR I+P  KG DVI QAQSGTGKTATF    LQ++D  +  CQAL+LAPTRELAQQI+KV+ A+GD++ V  HAC+GGTSVR+D + L  G  VVVGTPGRV DM++++ L+ D
Sbjct:   16 SNYDETTDSFDAMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDVACHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRVLKTD 164          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_CHAGB (ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.708e-49
Identity = 92/149 (61.74%), Postives = 119/149 (79.87%), Query Frame = 1
Query:  241 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            ++YDE  D+FD M L+  LLRGIYAYGFE+PSAIQQR I+P  KG DVI QAQSGTGKTATF   +LQ++D  +  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GGTSVR+D + L  G  V+VGTPGRV DM++++ L+ D
Sbjct:   17 SNYDETVDSFDDMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPTVKSCQALILAPTRELAQQIQKVVIAIGDFMNIECHACIGGTSVRDDMKALQDGPQVIVGTPGRVHDMIQRRILKTD 165          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.537e-49
Identity = 100/161 (62.11%), Postives = 122/161 (75.78%), Query Frame = 1
Query:  217 GSDGQD----FFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILSSGVHVVVGTPGRVFDMLRKQSLRP 684
            G DG +      ++++E+ D+FD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML ++ L P
Sbjct:    5 GPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 165          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.755e-48
Identity = 101/167 (60.48%), Postives = 127/167 (76.05%), Query Frame = 1
Query:  193 DARMNDLLGSDGQDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPDTS 693
            D  ++ ++ +DG     +YD+V ++FD M L+E LLRGIY +GFEKPSAIQ+R IVP   G DVI QAQSGTGKTATF   ILQ++D+     QALV+APTRELAQQI+KVM ALG+YL V +  C+GGTSVR+DQR L +G+HVVVGTPGRV DM+ + +L  DTS
Sbjct:    7 DVNVSSVVDADGL-IEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNAL--DTS 170          
The following BLAST results are available for this feature:
BLAST of EY660260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_SALSA2.074e-4966.89Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]
IF4A1_PANTR2.074e-4960.95Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
IF4A1_MOUSE2.074e-4960.95Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA2.074e-4960.95Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN2.074e-4960.95Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN2.074e-4960.95Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
IF4A_PHANO2.708e-4963.09ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
IF4A_CHAGB2.708e-4961.74ATP-dependent RNA helicase eIF4A OS=Chaetomium glo... [more]
IF4A1_RABIT3.537e-4962.11Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A_CAEEL1.755e-4860.48Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660260 ID=EY660260; Name=EY660260; organism=Citrus sinensis; type=EST; length=703bp
TTCCTCAACCCACGCGTCCGTGAACTCCGTCTCCTCAAAGCAAACAACTA
AACTCAGAGATCCGAGGAGTTCGGGGAAAACCCTATTCCACCCCCTAGTC
TTTAAAATCAAACAAGCTTCCACCTTTCATCATCATCACTATCAGTCATG
GCTGGTTTGGCTGAAGGATCCCAGTTTGATGCCCGTCAATTTGATGCTAG
AATGAATGATTTACTTGGAAGTGATGGACAAGATTTCTTCACATCGTATG
ATGAGGTTTATGATACTTTTGATGCTATGGGATTGCAAGAGAATCTTCTT
AGAGGCATTTATGCATATGGTTTTGAGAAGCCTTCTGCCATTCAGCAAAG
GGGGATTGTTCCATTCTGCAAGGGACTTGATGTAATTCAACAAGCACAGT
CTGGAACTGGAAAAACTGCAACTTTTTGCTCCGGAATTTTGCAGCAGCTT
GATTATGGTTTAGTTGAATGCCAAGCATTGGTTCTTGCTCCAACTAGGGA
ACTGGCGCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTG
GTGTCAAAGTGCATGCATGTGTAGGTGGAACCAGTGTCCGTGAAGATCAA
CGCATTCTTTCAAGCGGTGTACATGTTGTAGTTGGTACACCTGGTCGTGT
GTTTGACATGTTGCGGAAGCAATCTCTTCGCCCAGATACATCANGATCTT
TGT
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