EY660260

Overview
NameEY660260
Unique NameEY660260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DBP2_MAGGR (ATP-dependent RNA helicase DBP2 OS=Magnaporthe grisea GN=DBP2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  262 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR--KQSLR 681
            +TFD  G    ++  + A GF  P+AIQ +G      G DV+  A++G+GKT T+C   +  ++   +         L+LAPTRELA QI+  +   G    ++     GG       R LS GV V + TPGR+ DML   K +LR
Sbjct:  125 ETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLR 271          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DBP10_AJECN (ATP-dependent RNA helicase DBP10 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP10 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 48/139 (34.53%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVE--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSL 678
            F ++GL   LL+ I   GF  P+ IQ++ I       DV+  A++G+GKTA F   ++++L     +   +AL+L+P+RELA Q  KV++ LG    +K    VGG S+ E    ++S   +++ TPGR   +  + SL
Sbjct:   88 FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSL 226          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: SRMB_ECOLI (ATP-dependent RNA helicase srmB OS=Escherichia coli (strain K12) GN=srmB PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  265 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ-LDYGLVEC---QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQS 675
            TF  + L E+LL  +   GF +P+AIQ   I P   G DV+  A +GTGKTA +    LQ  LD+   +    + L+L PTRELA Q+    R L  +  + +    GG +      + S    +VV T GR+   +++++
Sbjct:    5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEEN 145          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: HAS1_NEOFI (ATP-dependent RNA helicase has1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=has1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 55/162 (33.95%), Postives = 82/162 (50.62%), Query Frame = 1
Query:  193 DARMNDLLGSDGQDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR 666
            DA   DL  +D     T   E    F  +GL E  L+ I   GF+  + IQ+R I P   G DV+  A++G+GKT +F    ++ L     + +     +V++PTRELA QI  V R L  Y        +GG + R +   L  GV++++ TPGR+ D L+
Sbjct:  118 DAESTDLPSADALRLPTVEGEP-QKFTELGLTEKTLKAINDMGFDTMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTYGIVIGGANRRAEAEKLMKGVNLLIATPGRLLDHLQ 278          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: HAS1_EMENI (ATP-dependent RNA helicase has1 OS=Emericella nidulans GN=has1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 50/137 (36.50%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR 666
            F  +GL E  L+GI   GFE  + IQQR I P   G DV+  A++G+GKT  F    ++ L     + +     +V++PTRELA QI  V R L           +GG + R +   L+ GV++++ TPGR+ D L+
Sbjct:  130 FTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSALRFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQ 266          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  265 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            +F+ + L+  LL+G+YA GF +PS IQ+  +         ++I Q+QSGTGKTA F   +L +++      Q L L+PT ELA Q  KV+  +G  Y  +K+   V G  +   Q+I      +V+GTPG V D   K
Sbjct:   92 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWCSK 226          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Pichia stipitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 49/138 (35.51%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  265 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDML 663
            TFD  G  E +L  + A GF  P+AIQ +G      G D++  A +G+GKT ++C   +  ++   +         LVLAPTRELA QI++     G    ++     GG    +  R L+ GV +V+ TPGR+ DML
Sbjct:   98 TFDEAGFPEYVLNEVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPAIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEIVIATPGRLIDML 235          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: CSHB_BACSU (DEAD-box ATP-dependent RNA helicase cshB OS=Bacillus subtilis GN=cshB PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 49/148 (33.11%), Postives = 84/148 (56.76%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQI-EKVMRALGDYLGVKVHA--CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPDTSXSL 702
            F+   L+  ++  ++  GF +P+ IQ+R I    K   VI Q+Q+GTGKT  +   +L ++D      Q ++ APTRELA QI ++ ++      G ++ +   +GGT  ++    L    H+VVGTPGR+ D++++Q+L    + SL
Sbjct:    6 FELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHLVVGTPGRIADLIKEQALSVHKAESL 153          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 60/188 (31.91%), Postives = 89/188 (47.34%), Query Frame = 1
Query:  160 AEGSQFDARQFDARMNDLLGSDGQDFF---TSYDEV---YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----------LVECQ-ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            A G+  +   FDA  N  +  D  +     TS  EV     TF  + L + L   I    + +P+ +Q+  I     G D++  AQ+G+GKTA FC  I+  +  G              C  AL+L+PTREL+ QI +  R      GV+V    GG  + +  R L  GV ++V TPGR+ D+L +
Sbjct:  115 AAGAGDEPEVFDAHQNTGINFDAYEDIPVETSGREVPPPVGTFAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLER 302          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: RH41_ORYSJ (DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica GN=Os02g0201900 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVE-CQ------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSL 678
            F + GL E L+  + A G+  P+ +Q + I        ++  A +G+GKTA+F   I+    +   E C       A+VLAPTREL  Q+E+  + LG  L  K    VGG  + +    + +G+ ++VGTPGR+ D+L K ++
Sbjct:  139 FSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHCSHVRSERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQIYRIENGIELIVGTPGRLIDLLMKHNV 282          
The following BLAST results are available for this feature:
BLAST of EY660260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_MAGGR1.270e-1435.37ATP-dependent RNA helicase DBP2 OS=Magnaporthe gri... [more]
DBP10_AJECN1.270e-1434.53ATP-dependent RNA helicase DBP10 OS=Ajellomyces ca... [more]
SRMB_ECOLI1.658e-1433.33ATP-dependent RNA helicase srmB OS=Escherichia col... [more]
HAS1_NEOFI1.658e-1433.95ATP-dependent RNA helicase has1 OS=Neosartorya fis... [more]
HAS1_EMENI1.658e-1436.50ATP-dependent RNA helicase has1 OS=Emericella nidu... [more]
DD19A_HUMAN1.658e-1436.96ATP-dependent RNA helicase DDX19A OS=Homo sapiens ... [more]
DBP2_PICST1.658e-1435.51ATP-dependent RNA helicase DBP2 OS=Pichia stipitis... [more]
CSHB_BACSU1.658e-1433.11DEAD-box ATP-dependent RNA helicase cshB OS=Bacill... [more]
RH52C_ORYSJ2.166e-1431.91DEAD-box ATP-dependent RNA helicase 52C OS=Oryza s... [more]
RH41_ORYSJ2.166e-1433.33DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660260 ID=EY660260; Name=EY660260; organism=Citrus sinensis; type=EST; length=703bp
TTCCTCAACCCACGCGTCCGTGAACTCCGTCTCCTCAAAGCAAACAACTA
AACTCAGAGATCCGAGGAGTTCGGGGAAAACCCTATTCCACCCCCTAGTC
TTTAAAATCAAACAAGCTTCCACCTTTCATCATCATCACTATCAGTCATG
GCTGGTTTGGCTGAAGGATCCCAGTTTGATGCCCGTCAATTTGATGCTAG
AATGAATGATTTACTTGGAAGTGATGGACAAGATTTCTTCACATCGTATG
ATGAGGTTTATGATACTTTTGATGCTATGGGATTGCAAGAGAATCTTCTT
AGAGGCATTTATGCATATGGTTTTGAGAAGCCTTCTGCCATTCAGCAAAG
GGGGATTGTTCCATTCTGCAAGGGACTTGATGTAATTCAACAAGCACAGT
CTGGAACTGGAAAAACTGCAACTTTTTGCTCCGGAATTTTGCAGCAGCTT
GATTATGGTTTAGTTGAATGCCAAGCATTGGTTCTTGCTCCAACTAGGGA
ACTGGCGCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTG
GTGTCAAAGTGCATGCATGTGTAGGTGGAACCAGTGTCCGTGAAGATCAA
CGCATTCTTTCAAGCGGTGTACATGTTGTAGTTGGTACACCTGGTCGTGT
GTTTGACATGTTGCGGAAGCAATCTCTTCGCCCAGATACATCANGATCTT
TGT
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