EY660260

Overview
NameEY660260
Unique NameEY660260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: PRP28_SCHPO (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Schizosaccharomyces pombe GN=prp28 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--GLVECQ------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQ 672
            ++  GL   +L+ +    +++PS+IQ+  I    +  D+I  A++G+GKTA F   ++  +     L E        A+VLAPTRELAQQI+       + LG +  + VGG +  E    +S G H+VV TPGR+ D L ++
Sbjct:  251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERR 393          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: HAS1_DEBHA (ATP-dependent RNA helicase HAS1 OS=Debaryomyces hansenii GN=HAS1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 51/144 (35.42%), Postives = 76/144 (52.78%), Query Frame = 1
Query:  250 DEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-----VECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR 666
            D V D F+  GL E  L+ I   GF K + +Q + I P   G DV+  A++G+GKT  F    ++ L Y L          +V++PTRELA QI  V R L  +        +GG + R++   L  GV++++ TPGR+ D L+
Sbjct:  100 DIVTDNFEEAGLSEPTLKAIKDMGFSKMTQVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML-YSLRFKPRNGTGVVVVSPTRELALQIFGVARELMAHHSQTFGIVIGGANRRQEAEKLMKGVNLLIATPGRLLDHLQ 242          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: HAS1_COCIM (ATP-dependent RNA helicase HAS1 OS=Coccidioides immitis GN=HAS1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 48/137 (35.04%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR 666
            F  + L E  L+ I   GFE  + IQ+RGI P   G DV+  A++G+GKT +F    ++ L     + +     +V++PTRELA QI  V R L  +        +GG + R +   L+ GV++++ TPGR+ D L+
Sbjct:  126 FTELNLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQ 262          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: HAS1_ASPCL (ATP-dependent RNA helicase has1 OS=Aspergillus clavatus GN=has1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 56/162 (34.57%), Postives = 81/162 (50.00%), Query Frame = 1
Query:  193 DARMNDLLGSDGQDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR 666
            DA   DL   D     T  D     F  +GL E  L+ I   GFE  + IQ+R I P   G DV+  A++G+GKT +F    ++ L     + +     LV++PTRELA QI  V R L  +        +GG + R +   L  GV++++ TPGR+ D L+
Sbjct:  121 DAEAADLPSMDAVRLPT-VDGEPQKFTELGLSEKTLKAINEMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVLVVSPTRELALQIFGVARELCQHHSQTYGIVIGGANRRAEAEKLMKGVNLLIATPGRLLDHLQ 281          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DBP8_SCHPO (ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe GN=dbp8 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  265 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR 666
            +F  +G+   L+  + A    +P+ IQ+  I    +G + I  A++G+GKTA F   I+++         AL+L PTRELA QI++   ALG  L +K    VGG  +      LS   HVVV TPGR+ D++R
Sbjct:    8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIR 141          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DBP4_ASPCL (ATP-dependent RNA helicase dbp4 OS=Aspergillus clavatus GN=dbp4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 53/147 (36.05%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  253 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSL 678
            E +++F  + L E  L G+ +  F+  + IQ R I    KG DV+  A++G+GKT  F   +L+ L Y     +     AL+L+PTRELA QI +V+R +G Y        +GG S+RE+Q  L   ++++V TPGR+   L + +L
Sbjct:   46 ESFESFSDLPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENL-YRRQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLREEQERLGR-MNILVCTPGRMLQHLDQTAL 190          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: RHLB_TOLAT (ATP-dependent RNA helicase rhlB OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rhlB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 47/142 (33.10%), Postives = 72/142 (50.70%), Query Frame = 1
Query:  265 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            TF  +GL+  +L G+ A GF   + IQ   I     G ++  QAQ+GTGKT  F +G    L       +    + + L++APTRELA QI      + +  G K+    GG    +   +L  GV +++GT GR+ D L++
Sbjct:   10 TFAELGLEPQVLAGVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAFLAGTFNYLLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQLAVLQEGVDLLIGTTGRIIDYLKQ 151          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: RH39_ORYSJ (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 45/147 (30.61%), Postives = 80/147 (54.42%), Query Frame = 1
Query:  253 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVEC-------QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR 666
            EV D+F+ +GL E ++  +   G  KP+ IQ  G+     G  V+  + +G+GKT  +   ++Q L  D  ++         +A+VL PTREL +Q+ +V +++  +   +     GG+ +R  +  L+  V +VVGTPGR+ D ++
Sbjct:  107 EVVDSFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIK 253          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: PRP28_PICGU (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pichia guilliermondii GN=PRP28 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 52/144 (36.11%), Postives = 70/144 (48.61%), Query Frame = 1
Query:  280 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-----DYGLVECQ---------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            G+   LL  I   G+++P+ IQ+  I       DV+  A++G+GKT  F   +L  L     DY  VE +          LVLAPTRELA QI K  +     LG  V   +GG    E  + +  G H+VV TPGR+ D   K
Sbjct:  156 GIPTTLLNTIDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSYLSAIDKDYMEVEHKQESNLNKVLGLVLAPTRELALQISKEAKKFASVLGYNVVTIIGGHQYEETVKSVQDGAHIVVATPGRLIDSAEK 299          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: PRP28_COCIM (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides immitis GN=PRP28 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  280 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--GLVECQ--------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSL 678
            GL + LL  I   G++ PS IQ+  I    +  D+I  A +G+GKTA F   +L  +     L E +        A++LAPTRELAQQIE   R   + LG  V + VGG S+ E    L +G  +++ TPGR+ D + ++ L
Sbjct:  383 GLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEEQSFSLRNGAEIIIATPGRLVDCIERRIL 525          
The following BLAST results are available for this feature:
BLAST of EY660260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PRP28_SCHPO2.829e-1434.27Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
HAS1_DEBHA2.829e-1435.42ATP-dependent RNA helicase HAS1 OS=Debaryomyces ha... [more]
HAS1_COCIM2.829e-1435.04ATP-dependent RNA helicase HAS1 OS=Coccidioides im... [more]
HAS1_ASPCL2.829e-1434.57ATP-dependent RNA helicase has1 OS=Aspergillus cla... [more]
DBP8_SCHPO2.829e-1436.57ATP-dependent RNA helicase dbp8 OS=Schizosaccharom... [more]
DBP4_ASPCL2.829e-1436.05ATP-dependent RNA helicase dbp4 OS=Aspergillus cla... [more]
RHLB_TOLAT3.694e-1433.10ATP-dependent RNA helicase rhlB OS=Tolumonas auens... [more]
RH39_ORYSJ3.694e-1430.61DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sa... [more]
PRP28_PICGU3.694e-1436.11Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
PRP28_COCIM3.694e-1437.06Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660260 ID=EY660260; Name=EY660260; organism=Citrus sinensis; type=EST; length=703bp
TTCCTCAACCCACGCGTCCGTGAACTCCGTCTCCTCAAAGCAAACAACTA
AACTCAGAGATCCGAGGAGTTCGGGGAAAACCCTATTCCACCCCCTAGTC
TTTAAAATCAAACAAGCTTCCACCTTTCATCATCATCACTATCAGTCATG
GCTGGTTTGGCTGAAGGATCCCAGTTTGATGCCCGTCAATTTGATGCTAG
AATGAATGATTTACTTGGAAGTGATGGACAAGATTTCTTCACATCGTATG
ATGAGGTTTATGATACTTTTGATGCTATGGGATTGCAAGAGAATCTTCTT
AGAGGCATTTATGCATATGGTTTTGAGAAGCCTTCTGCCATTCAGCAAAG
GGGGATTGTTCCATTCTGCAAGGGACTTGATGTAATTCAACAAGCACAGT
CTGGAACTGGAAAAACTGCAACTTTTTGCTCCGGAATTTTGCAGCAGCTT
GATTATGGTTTAGTTGAATGCCAAGCATTGGTTCTTGCTCCAACTAGGGA
ACTGGCGCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTG
GTGTCAAAGTGCATGCATGTGTAGGTGGAACCAGTGTCCGTGAAGATCAA
CGCATTCTTTCAAGCGGTGTACATGTTGTAGTTGGTACACCTGGTCGTGT
GTTTGACATGTTGCGGAAGCAATCTCTTCGCCCAGATACATCANGATCTT
TGT
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