EY660260

Overview
NameEY660260
Unique NameEY660260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DDX31_DICDI (Probable ATP-dependent RNA helicase ddx31 OS=Dictyostelium discoideum GN=ddx31 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 48/155 (30.97%), Postives = 84/155 (54.19%), Query Frame = 1
Query:  253 EVYDTFDAMG-----LQENLLRGIYAY-GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVE----CQALVLAPTRELAQQI-EKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRP 684
            E  +TF +M      L E L+R +  +   EKP+ IQ+  I P  KG D + +AQ+G+GKT ++   ++Q+L    V     C  +++ PTREL+ QI E++ + L  +  +     +GG +   ++  +  G++++V TPGR+ D L+     P
Sbjct:  199 EKSETFSSMNWGSLQLSETLVRNLVGHMKHEKPTHIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQRVTRSDGCYCVIITPTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGINILVATPGRLLDHLQNTQSFP 353          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DD19A_MOUSE (ATP-dependent RNA helicase DDX19A OS=Mus musculus GN=Ddx19a PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 49/138 (35.51%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  265 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            +F+ + L+  LL+G+YA GF +PS IQ+  +         ++I Q+QSGTGKTA F   +L +++      Q L L+PT ELA Q  KV+  +G +   +K+   V G  +   Q++      +V+GTPG V D   K
Sbjct:   92 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKV---SEQIVIGTPGTVLDWCSK 226          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DBP8_YARLI (ATP-dependent RNA helicase DBP8 OS=Yarrowia lipolytica GN=DBP8 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 49/134 (36.57%), Postives = 68/134 (50.75%), Query Frame = 1
Query:  265 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR 666
            +F  +GL E L   +      KPSAIQ+  I    KG D I  A++G+GKT  F + +L +          LVL PTRELA QI +   ALG  + ++V    GG  + +    L    H V+ TPGR+ D +R
Sbjct:    2 SFTDLGLPEWLNESLSNMAITKPSAIQKACIPQIMKGKDCIGGARTGSGKTIAFAAPMLAEWSKDPCGIFGLVLTPTRELAIQIAEQFTALGANMNIRVALIYGGVDMVKQSLELQKMPHFVIATPGRLADHIR 135          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DBP8_BOTFB (ATP-dependent RNA helicase dbp8 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 1
Query:  265 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR 666
            TF A+ ++  L+  + +   ++P+ IQ+  I    KG D I  +++G+GKT  F   ILQ+         ALVL PTRELA QI +  +A+     +K     GG+ +R     L+   H+V+ TPGR+ D +R
Sbjct:  117 TFAALNVKPWLVGSLGSMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQRPHIVIATPGRLADHIR 250          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  265 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGILQQLDYGLVECQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDML 663
            TFD  G  + +L  + A GF+KP+ IQ +G      G D++  A +G+GKT ++C  GI+      L+        LVLAPTRELA QI+      G    ++     GG    +  R LS G  +V+ TPGR+ DML
Sbjct:  114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDML 251          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  265 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGILQQLDYGLVECQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDML 663
            TFD  G  + +L  + A GF+KP+ IQ +G      G D++  A +G+GKT ++C  GI+      L+        LVLAPTRELA QI+      G    ++     GG    +  R LS G  +V+ TPGR+ DML
Sbjct:  114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDML 251          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: RHLB_SERP5 (ATP-dependent RNA helicase rhlB OS=Serratia proteamaculans (strain 568) GN=rhlB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 48/141 (34.04%), Postives = 70/141 (49.65%), Query Frame = 1
Query:  268 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRK 669
            F    L   +L  +   GF+  + IQ   +     G DV  QAQ+GTGKT  F +     L       D  + + +AL++APTRELA QI     AL    G+K+    GG    +  ++L SGV ++VGT GR+ D  ++
Sbjct:   11 FSDFALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRALIMAPTRELAVQIHSDAEALSQSTGLKMGLAYGGDGYDKQLKVLESGVDILVGTTGRLIDYAKQ 151          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: PRP28_NEOFI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp28 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 51/148 (34.46%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  265 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--GLVECQ--------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSL 678
            +++  GL + LL  +   G+++P+ IQ+  I    +  D+I  A +G+GKTA+F   +L  +     + E +        A+VLAPTRELAQQIE   R     LG  V + VGG S  E    L +G  +++ TPGR+ D + ++ L
Sbjct:  365 SWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRLL 512          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: PRP28_ASPFU (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus fumigatus GN=prp28 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 51/148 (34.46%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  265 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--GLVECQ--------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSL 678
            +++  GL + LL  +   G+++P+ IQ+  I    +  D+I  A +G+GKTA+F   +L  +     + E +        A+VLAPTRELAQQIE   R     LG  V + VGG S  E    L +G  +++ TPGR+ D + ++ L
Sbjct:  365 SWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRLL 512          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: MAK5_CRYNE (ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans GN=MAK5 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 54/159 (33.96%), Postives = 80/159 (50.31%), Query Frame = 1
Query:  250 DEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL------DYGLVE-CQALVLAPTRELAQQIEKVMRALGDYL-------------GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR 666
            D++   + ++ L  +L R   A  F  P+AIQ R I     G DV+  A++G+GKT  +   IL  L        G+     ALVL PTRELA Q+   + AL  +               V V + VGG S ++ +RIL  G  V+V TPGR++D+++
Sbjct:  168 DDLLPEWSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGRDVVGVAETGSGKTLAYSLPILHYLLGQRKSKAGIKRPLSALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQKRILERGCDVIVATPGRLWDLIK 326          
The following BLAST results are available for this feature:
BLAST of EY660260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX31_DICDI6.302e-1430.97Probable ATP-dependent RNA helicase ddx31 OS=Dicty... [more]
DD19A_MOUSE6.302e-1435.51ATP-dependent RNA helicase DDX19A OS=Mus musculus ... [more]
DBP8_YARLI6.302e-1436.57ATP-dependent RNA helicase DBP8 OS=Yarrowia lipoly... [more]
DBP8_BOTFB6.302e-1434.33ATP-dependent RNA helicase dbp8 OS=Botryotinia fuc... [more]
DBP2_YEAST6.302e-1436.96ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_YEAS76.302e-1436.96ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
RHLB_SERP58.230e-1434.04ATP-dependent RNA helicase rhlB OS=Serratia protea... [more]
PRP28_NEOFI8.230e-1434.46Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_ASPFU8.230e-1434.46Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
MAK5_CRYNE8.230e-1433.96ATP-dependent RNA helicase MAK5 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660260 ID=EY660260; Name=EY660260; organism=Citrus sinensis; type=EST; length=703bp
TTCCTCAACCCACGCGTCCGTGAACTCCGTCTCCTCAAAGCAAACAACTA
AACTCAGAGATCCGAGGAGTTCGGGGAAAACCCTATTCCACCCCCTAGTC
TTTAAAATCAAACAAGCTTCCACCTTTCATCATCATCACTATCAGTCATG
GCTGGTTTGGCTGAAGGATCCCAGTTTGATGCCCGTCAATTTGATGCTAG
AATGAATGATTTACTTGGAAGTGATGGACAAGATTTCTTCACATCGTATG
ATGAGGTTTATGATACTTTTGATGCTATGGGATTGCAAGAGAATCTTCTT
AGAGGCATTTATGCATATGGTTTTGAGAAGCCTTCTGCCATTCAGCAAAG
GGGGATTGTTCCATTCTGCAAGGGACTTGATGTAATTCAACAAGCACAGT
CTGGAACTGGAAAAACTGCAACTTTTTGCTCCGGAATTTTGCAGCAGCTT
GATTATGGTTTAGTTGAATGCCAAGCATTGGTTCTTGCTCCAACTAGGGA
ACTGGCGCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTG
GTGTCAAAGTGCATGCATGTGTAGGTGGAACCAGTGTCCGTGAAGATCAA
CGCATTCTTTCAAGCGGTGTACATGTTGTAGTTGGTACACCTGGTCGTGT
GTTTGACATGTTGCGGAAGCAATCTCTTCGCCCAGATACATCANGATCTT
TGT
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