EY660260

Overview
NameEY660260
Unique NameEY660260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.078e-41
Identity = 83/155 (53.55%), Postives = 110/155 (70.97%), Query Frame = 1
Query:  223 DGQDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            D     ++YD+V  +FD + L+E LLRGI+ YGF +PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ +D  +   Q L+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGTS++ED   L  G  ++VGTPGRVFDM+ ++  + D
Sbjct:    9 DENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTD 163          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.047e-41
Identity = 91/166 (54.82%), Postives = 116/166 (69.88%), Query Frame = 1
Query:  187 QFDARMNDLLGSDGQDFFTSYD-EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLR 681
            +FD  ++D L     +F TS D +V  TF++M L+++LLRGIYAYGFE PSAIQ R I    KG D I QAQSGTGKTATF   +L+ +D    E QA+VL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGTS+  D + L +G  VV GTPGR  DM++K  LR
Sbjct:    3 EFDRDLDDEL-----EFKTSKDVDVTPTFESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIKGRDTIAQAQSGTGKTATFSISMLEVIDTKHRETQAMVLSPTRELATQIQSVILALGDYMNVQCHACIGGTSLSVDMKKLEAGQQVVSGTPGRCLDMIKKGCLR 163          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.347e-40
Identity = 82/149 (55.03%), Postives = 107/149 (71.81%), Query Frame = 1
Query:  241 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            ++YD V   FD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ++D      QAL+LAPTRELA QI+ V+ ++G YL V VHA +GGTS+ +D     SGV +VVGTPGRVFDM+ ++  R D
Sbjct:   16 SNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMSDDIEAFKSGVQIVVGTPGRVFDMIERRYFRTD 164          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.347e-40
Identity = 80/142 (56.34%), Postives = 106/142 (74.65%), Query Frame = 1
Query:  253 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSL 678
            +V+ TF++M L+ +LL+GIY YGFE PSAIQ R I+    G D I QAQSGTGKTATF  G+L+ +D    +CQAL+L+PTRELAQQI+ V++ LGDY+ V  HAC+GGT V ED + L  G  +V GTPGRV DM+++++L
Sbjct:   23 KVHATFESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHACIGGTHVGEDIKKLQQGQQIVSGTPGRVVDMIKRRNL 164          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.759e-40
Identity = 82/149 (55.03%), Postives = 108/149 (72.48%), Query Frame = 1
Query:  241 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            T+YD V   FD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ++D      QAL+LAPTRELA QI+ V+ ++G YL V VHA +GGTS+++D     SGV VVVGTPGRVFDM+ ++  + +
Sbjct:   16 TNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDDIEAFRSGVQVVVGTPGRVFDMIERRYFKTE 164          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.298e-40
Identity = 79/142 (55.63%), Postives = 104/142 (73.24%), Query Frame = 1
Query:  253 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSL 678
            +V+ TF++M L+ +LL+GIY YGFE PSAIQ R I+    G D I QAQSGTGKTATF  G+LQ +D    +CQAL+L+PTRELA QI+ V++ LGDY+ +  HAC+GGT V +D + L  G  +V GTPGRV DM+++Q L
Sbjct:   23 KVHATFESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDMVKRQQL 164          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 85/149 (57.05%), Postives = 108/149 (72.48%), Query Frame = 1
Query:  241 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            T+YD+V   FD M L ENLLRG++ YGFE+PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ AL  ++ +KVHAC+GGTS  ED   L     +VVGTPGRVFD ++++  R D
Sbjct:   15 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTD 162          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 85/149 (57.05%), Postives = 108/149 (72.48%), Query Frame = 1
Query:  241 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            T+YD+V   FD M L ENLLRG++ YGFE+PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ AL  ++ +KVHAC+GGTS  ED   L     +VVGTPGRVFD ++++  R D
Sbjct:   15 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTD 162          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.920e-40
Identity = 85/155 (54.84%), Postives = 108/155 (69.68%), Query Frame = 1
Query:  223 DGQDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLRPD 687
            D     T+YD+V   FD M L E LLRG++ YGF KPSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ ALG ++ +KVHAC+GGTS  ED   L     +VVGTPGRVFD ++++  + D
Sbjct:   10 DESQIETNYDKVVYEFDDMNLNEKLLRGVFGYGFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQRIDPAIKAPQALMLAPTRELALQIQKVVMALGFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRKFKVD 163          
BLAST of EY660260 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.119e-40
Identity = 80/143 (55.94%), Postives = 106/143 (74.13%), Query Frame = 1
Query:  253 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRKQSLR 681
            E   +F+ MG++E++LRG+Y YGFEKPSAIQQR ++P  +G DVI QAQSGTGKT+     + Q +D    E QAL+L+PTRELA Q EK ++A+G +  ++ HAC+GG SV ED R L  GVHVV GTPGRV DM++++SLR
Sbjct:   32 EPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLR 174          
The following BLAST results are available for this feature:
BLAST of EY660260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_KLULA2.078e-4153.55ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
FAL1_YARLI6.047e-4154.82ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]
IF4A_LODEL1.347e-4055.03ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
FAL1_DEBHA1.347e-4056.34ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
IF4A_PICST1.759e-4055.03ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
FAL1_PICST2.298e-4055.63ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
IF4A_YEAST3.001e-4057.05ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS73.001e-4057.05ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_CANGA3.920e-4054.84ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
RH2_ARATH5.119e-4055.94DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660260 ID=EY660260; Name=EY660260; organism=Citrus sinensis; type=EST; length=703bp
TTCCTCAACCCACGCGTCCGTGAACTCCGTCTCCTCAAAGCAAACAACTA
AACTCAGAGATCCGAGGAGTTCGGGGAAAACCCTATTCCACCCCCTAGTC
TTTAAAATCAAACAAGCTTCCACCTTTCATCATCATCACTATCAGTCATG
GCTGGTTTGGCTGAAGGATCCCAGTTTGATGCCCGTCAATTTGATGCTAG
AATGAATGATTTACTTGGAAGTGATGGACAAGATTTCTTCACATCGTATG
ATGAGGTTTATGATACTTTTGATGCTATGGGATTGCAAGAGAATCTTCTT
AGAGGCATTTATGCATATGGTTTTGAGAAGCCTTCTGCCATTCAGCAAAG
GGGGATTGTTCCATTCTGCAAGGGACTTGATGTAATTCAACAAGCACAGT
CTGGAACTGGAAAAACTGCAACTTTTTGCTCCGGAATTTTGCAGCAGCTT
GATTATGGTTTAGTTGAATGCCAAGCATTGGTTCTTGCTCCAACTAGGGA
ACTGGCGCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTG
GTGTCAAAGTGCATGCATGTGTAGGTGGAACCAGTGTCCGTGAAGATCAA
CGCATTCTTTCAAGCGGTGTACATGTTGTAGTTGGTACACCTGGTCGTGT
GTTTGACATGTTGCGGAAGCAATCTCTTCGCCCAGATACATCANGATCTT
TGT
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