EY660255

Overview
NameEY660255
Unique NameEY660255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9639 contig Csv1_Contig9639:685..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.597e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DHLADPVNNNAWAYATNFVPGK
Sbjct:  237 MFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.597e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DHLADPVNNNAWAYATNFVPGK
Sbjct:  237 MFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.597e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DH+ADPVNNNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAW+YATNFVPGK
Sbjct:   75 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAW+YATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAW+YATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAW+YATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAW+YATNFVPGK
Sbjct:  228 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.922e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAW+YATNFVPGK
Sbjct:  225 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWA+ATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
The following BLAST results are available for this feature:
BLAST of EY660255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB2A_PYRPY7.597e-1688.10Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY7.597e-1688.10Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_MAIZE7.597e-1688.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2D_SOLLC9.922e-1688.10Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB25_TOBAC9.922e-1688.10Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_PETSP9.922e-1688.10Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_PETSP9.922e-1688.10Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_PEA9.922e-1688.10Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_TOBAC9.922e-1688.10Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC1.296e-1588.10Chlorophyll a-b binding protein 3C, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660255 ID=EY660255; Name=EY660255; organism=Citrus sinensis; type=EST; length=321bp
CAGGCTTCCGCAACAATGGATTGCCGAACAAAAGGGTTCTGNTTGGNTTC
TTCGTTCAGGCCATTGTCACCGGCAAGTGACCGCTAGAGAACTTGGTCGA
CCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATT
GGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAA
CATGTGAATTATGTAATGTACTGCTACTACTAGTTTGAGGGGATTGTATT
TTAAAAAAAAAAAAAAAAAAA
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