EY660255

Overview
NameEY660255
Unique NameEY660255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9639 contig Csv1_Contig9639:685..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWA+ATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWA+ATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWA+ATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWA+ATNFVPGK
Sbjct:  225 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWA+ATNFVPGK
Sbjct:  223 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWA+ATNFVPGK
Sbjct:  223 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLA+PVNNNAWAYATNFVPGK
Sbjct:  204 MFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWA+ATNFVPGK
Sbjct:  225 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWA+ATNFVPGK
Sbjct:   83 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124
[Close]
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWA+ATNFVPGK
Sbjct:  225 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
The following BLAST results are available for this feature:
BLAST of EY660255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB2C_SOLLC1.296e-1588.10Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC1.296e-1588.10Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC1.296e-1588.10Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_PETSP1.296e-1588.10Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_APIGR1.296e-1588.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_HORVU1.296e-1588.10Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN1.296e-1588.10Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_SINAL1.296e-1588.10Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_RAPSA1.296e-1588.10Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_PETSP1.296e-1588.10Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660255 ID=EY660255; Name=EY660255; organism=Citrus sinensis; type=EST; length=321bp
CAGGCTTCCGCAACAATGGATTGCCGAACAAAAGGGTTCTGNTTGGNTTC
TTCGTTCAGGCCATTGTCACCGGCAAGTGACCGCTAGAGAACTTGGTCGA
CCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATT
GGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAA
CATGTGAATTATGTAATGTACTGCTACTACTAGTTTGAGGGGATTGTATT
TTAAAAAAAAAAAAAAAAAAA
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