EY660255

Overview
NameEY660255
Unique NameEY660255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.692e-15
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQA+VTGK PLENL DHLADPVNNNAW+YATNFVPGK
Sbjct:  225 MFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.210e-15
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DHL DPVNNNAWAYATNFVPGK
Sbjct:  223 MFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.210e-15
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DH+ADPVNNNAWA+ATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.210e-15
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DH+ADPVNNNAWA+ATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.210e-15
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHL+DPVNNNAW+YATNFVPGK
Sbjct:  227 MFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.210e-15
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DHLADPVNNNAWA+ATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.210e-15
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DHLADPVNNNAWA+ATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.887e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLA PVNNNAWAYATNFVPGK
Sbjct:  222 MFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.887e-15
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPG 161
            + GFFVQAIVTGK PLENL DH+ADPVNNNAWAYATNFVPG
Sbjct:  221 MFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.924e-15
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFV AIVTGK PLENL DHLADPVNNNAW+YATNFVPGK
Sbjct:  187 MFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
The following BLAST results are available for this feature:
BLAST of EY660255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB25_NICPL1.692e-1585.71Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB48_MAIZE2.210e-1585.71Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2F_SOLLC2.210e-1585.71Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.210e-1585.71Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB28_PEA2.210e-1585.71Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_ARATH2.210e-1585.71Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH2.210e-1585.71Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_SOYBN2.887e-1588.10Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE2.887e-1587.80Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PEA4.924e-1585.71Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660255 ID=EY660255; Name=EY660255; organism=Citrus sinensis; type=EST; length=321bp
CAGGCTTCCGCAACAATGGATTGCCGAACAAAAGGGTTCTGNTTGGNTTC
TTCGTTCAGGCCATTGTCACCGGCAAGTGACCGCTAGAGAACTTGGTCGA
CCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATT
GGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAA
CATGTGAATTATGTAATGTACTGCTACTACTAGTTTGAGGGGATTGTATT
TTAAAAAAAAAAAAAAAAAAA
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