EY660255

Overview
NameEY660255
Unique NameEY660255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.431e-15
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAW +ATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.400e-15
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  109 MFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.400e-15
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  225 MFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.400e-15
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.871e-14
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  196 MFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.871e-14
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.871e-14
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  222 MFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.871e-14
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  222 MFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.192e-14
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFF+QAIVTGK PLENL DHL DPVNNNAW+YATNFVP K
Sbjct:  226 MFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.192e-14
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  223 MFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
The following BLAST results are available for this feature:
BLAST of EY660255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB2A_SPIOL6.431e-1585.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PINSY8.400e-1585.71Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_PINTH8.400e-1585.71Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_GOSHI8.400e-1585.71Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB25_SOLLC1.871e-1483.33Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_TOBAC1.871e-1483.33Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_ORYSJ1.871e-1483.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.871e-1483.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP3.192e-1480.95Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_LEMGI3.192e-1480.95Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660255 ID=EY660255; Name=EY660255; organism=Citrus sinensis; type=EST; length=321bp
CAGGCTTCCGCAACAATGGATTGCCGAACAAAAGGGTTCTGNTTGGNTTC
TTCGTTCAGGCCATTGTCACCGGCAAGTGACCGCTAGAGAACTTGGTCGA
CCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATT
GGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAA
CATGTGAATTATGTAATGTACTGCTACTACTAGTTTGAGGGGATTGTATT
TTAAAAAAAAAAAAAAAAAAA
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