EY660255

Overview
NameEY660255
Unique NameEY660255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.169e-14
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWAYAT   PGK
Sbjct:  215 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.444e-14
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.287e-14
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DH+ DPV NNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.287e-14
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLE+L DH+ADPVNNNAW  ATNFVPGK
Sbjct:  225 MFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.213e-13
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DHLADP  NNAWAYATNF PGK
Sbjct:  224 MFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.529e-13
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  224 MFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.987e-12
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPG 161
            + GFFVQAIVTGK PLENL+DHL +PV NNAW YAT FVPG
Sbjct:  224 MFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.135e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPG 161
            + GFFVQAIVTGK PLENL DHL DPV NNAW +AT F PG
Sbjct:  227 MFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.303e-11
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPG 161
            + GFFVQAIVTGK PLENL DHLADPV NNAWAYA    PG
Sbjct:  227 MFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
The following BLAST results are available for this feature:
BLAST of EY660255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB22_SOYBN4.169e-1483.33Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB26_PETSP5.444e-1480.95Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB24_SOLLC9.287e-1480.95Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_WHEAT9.287e-1480.95Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU1.213e-1380.95Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB215_PEA3.529e-1376.19Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC2.987e-1278.05Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.135e-1175.61Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_PHYPA3.303e-1178.05Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660255 ID=EY660255; Name=EY660255; organism=Citrus sinensis; type=EST; length=321bp
CAGGCTTCCGCAACAATGGATTGCCGAACAAAAGGGTTCTGNTTGGNTTC
TTCGTTCAGGCCATTGTCACCGGCAAGTGACCGCTAGAGAACTTGGTCGA
CCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATT
GGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAA
CATGTGAATTATGTAATGTACTGCTACTACTAGTTTGAGGGGATTGTATT
TTAAAAAAAAAAAAAAAAAAA
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