EY660252

Overview
NameEY660252
Unique NameEY660252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_DESDG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfovibrio desulfuricans (strain G20) GN=dxr PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.546e-35
Identity = 83/181 (45.86%), Postives = 110/181 (60.77%), Query Frame = 3
Query:  243 PKPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFR 785
            P+ + +LGSTGSIGT  L +V    + F + ALA   N+ LLA Q   ++P  +AV N +  DE+   L     +P I  G++G    A  P+A  V++  VG AGL+ TVAA  AGK IALANKE+L+  G  +  L H+    +LP DSEH+AIFQ +QG     +RRIILTASGG FR
Sbjct:   18 PRSLVLLGSTGSIGTSALRVVERQPELFRITALAGARNVRLLARQAAAYRPPHLAVINGNAADELASLLP-AGYRPRIHTGQEGYEFLAALPEADCVLSAQVGAAGLRATVAAARAGKTIALANKESLVLAGGLIRRLCHETGASVLPVDSEHNAIFQALQGHDAAQMRRIILTASGGPFR 197          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_AGRT5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dxr PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.546e-35
Identity = 85/194 (43.81%), Postives = 116/194 (59.79%), Query Frame = 3
Query:  243 PKPISVLGSTGSIGTQTLDIVAE--HEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            P+ +++LGSTGSIGT TLD+V +    D F ++AL    NI LLA+Q + F  Q+    ++   + +K ALA    K  + AG  G+ EAA   DA  V+  I G  GL PT+ A   G DIALANKE L++ G   L    +   +++P DSEHSAIFQC+ G  + A+ RI+LTASGG FR W    M N++
Sbjct:    8 PRKLTILGSTGSIGTNTLDVVRQLGGRDGFEIMALTGAGNIALLAEQAREFGAQLAVTADDDKYEALKSALAGTGIK--VAAGMAGLEEAASM-DAGWVMAAIAGTPGLAPTLTAARRGADIALANKECLVSAGDVFLRTVKQGGGRLIPVDSEHSAIFQCLTGEYKQAVERIVLTASGGPFRTWSRDEMSNVT 198          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_RHOCS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxr PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.243e-35
Identity = 82/200 (41.00%), Postives = 118/200 (59.00%), Query Frame = 3
Query:  207 AVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNM 806
            +VT       DG + ++VLGSTGS+G+ T++++  + +++  VAL A  N+  LA Q +R +P+V  V +E+   ++K+ALA         AG   V+EAA+ P A  V+  IVG AGL+PT+AA   G  +A ANKE L+  G  ++    +H   +LP DSEHSAIFQ        A+ R+ILTASGG FR W    M
Sbjct:    4 SVTPRHSTGGDGIRSVTVLGSTGSVGSNTVELIEAYPERYRTVALVARRNVAALAGQARRLRPEVAVVADEAHYADLKDALAGTGIAAA--AGPAAVVEAAQRP-ADWVMAAIVGAAGLEPTLAAARRGAIVAFANKECLVCAGELLMAEVRRHGATLLPVDSEHSAIFQVFDPERRPAVSRLILTASGGPFRTWTRERM 200          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PSEP1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dxr PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.243e-35
Identity = 81/197 (41.12%), Postives = 115/197 (58.38%), Query Frame = 3
Query:  243 PKPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            P+ I+VLG+TGSIG  TLD++A H D++   AL   S I  L     R +P    V +      ++  LA      E+L GE G+ + A   +   V+  IVG AGL+PT+AA+EAGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+     +GL  V +RRI+LTASGG FR+ PV  + +++
Sbjct:    8 PQRITVLGATGSIGLSTLDVIARHPDRYQAFALTGYSRIDELLALCVRHRPAFAVVPSTEAAVRLRAGLAAAGCTTEVLEGEAGLCQVASAAEVDAVMAAIVGAAGLRPTLAAVEAGKKVLLANKEALVMSGALFMEAVRQKGAVLLPIDSEHNAIFQCMPGDYARGLSAVGVRRILLTASGGPFRETPVEALLDVT 204          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_BACP2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus pumilus (strain SAFR-032) GN=dxr PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.243e-35
Identity = 80/179 (44.69%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  252 ISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRD 788
            IS+LG+TGSIG QTLD++ +H DKF + A+  G N+      +++F+P+ V   +E     +K    + E   ++ AG++  IEAA +     VV  +VG  GL PT+ AIE  K IALANKETL+  G  V   A  +++ +LP DSEHSAIFQC+QG     + R+I+TASGG+FRD
Sbjct:    4 ISLLGATGSIGEQTLDVIRQHPDKFKLKAMTFGRNVDKAIPIIEQFQPEFVGCLSEEAYHTLKGH--SFEYDVKMAAGDEANIEAAIYDAVDVVVNALVGSVGLVPTLKAIEQKKTIALANKETLVTAGHIVKEYAKTYDVPLLPVDSEHSAIFQCLQGEQAKNIERLIVTASGGSFRD 180          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_STRAW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Streptomyces avermitilis GN=dxr PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.460e-35
Identity = 87/192 (45.31%), Postives = 118/192 (61.46%), Query Frame = 3
Query:  258 VLGSTGSIGTQTLDIVAEHEDKFIVVAL-AAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV----EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            +LGSTGSIGTQ +D+V  + D+F V  L AAG  + LLA+Q  R +   VAV  E ++  ++EAL       E  PEILAG     + A   D  TV+ GI G  GL PT+AA+EAG+ +ALANKE+LI GGP V  LA     +I+P DSEH+A+FQ +       +R++++TASGG FR      + N+S
Sbjct:    2 ILGSTGSIGTQAIDLVLRNPDRFRVTGLSAAGGRVGLLAEQAHRLRVSTVAVAREDVVPVLREALTAQYGPGEPLPEILAGADAATQLAAS-DCHTVLNGITGSIGLAPTLAALEAGRTLALANKESLIVGGPLVKALAKPG--QIIPVDSEHAALFQALAAGTRADVRKLVVTASGGPFRGRTKAELANVS 190          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_NITMU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dxr PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.460e-35
Identity = 77/194 (39.69%), Postives = 119/194 (61.34%), Query Frame = 3
Query:  252 ISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ-----GLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            +++LGSTGSIG  TLD+VA H D+F VVAL A  ++  + +Q +RF+P+   + +E+  + ++  +       E+L G   + + A  PD  TV+  IVG AG++PT AA   GK + LANKET++  G     +  +++  +LP DSEH+AIFQ +       L  V +RRI+LTASGG FR  P+  ++N++
Sbjct:    7 LTILGSTGSIGVSTLDVVARHPDRFRVVALTANKSVQKILEQCRRFEPRYAVLLDEASAELLQVEIRRAGLATEVLWGVDSLEKVASLPDVDTVMAAIVGAAGIRPTFAAAATGKRVLLANKETMVMAGRIFTDVVKENHATLLPIDSEHNAIFQSLPQHFSGDLRAVGVRRILLTASGGPFRQMPLAALENVT 200          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_BACSU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus subtilis GN=dxr PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 9.460e-35
Identity = 81/181 (44.75%), Postives = 118/181 (65.19%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRD 788
            K I +LG+TGSIG QTLD++  H+D+F +V+++ G NI      ++ F+P+ V+V +     ++K+   + E   +I  GE+G+IEAA   +   VV  ++G  GL PT+ AIE  K IALANKETL+  G  V   A K+++ +LP DSEHSAIFQ +QG     + R+I+TASGG+FRD
Sbjct:    2 KNICLLGATGSIGEQTLDVLRAHQDQFQLVSMSFGRNIDKAVPMIEVFQPKFVSVGDLDTYHKLKQMSFSFE--CQIGLGEEGLIEAAVMEEVDIVVNALLGSVGLIPTLKAIEQKKTIALANKETLVTAGHIVKEHAKKYDVPLLPVDSEHSAIFQALQGEQAKNIERLIITASGGSFRD 180          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CLOTH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dxr PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.235e-34
Identity = 86/189 (45.50%), Postives = 120/189 (63.49%), Query Frame = 3
Query:  252 ISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            IS+LGSTGSIG QTLD+      K  V  LAA  NI LL  Q + F+P++VAV++E     +++ L++ + K  ++ G +G+   A      TVVT IVG AGL PT+ AI+  K+IALANKETL+  G  V+  A +  +KILP DSEHSA+FQ + G  +  + +IILTASGG FR      ++N++
Sbjct:    5 ISILGSTGSIGVQTLDVARNLNIK--VDGLAANKNIDLLEKQAREFQPKIVAVKDEERARILRDRLSDTDCK--VVGGVEGLKMVASIETVETVVTSIVGIAGLIPTMEAIKHKKNIALANKETLVTAGHIVMSEAARMGVKILPVDSEHSAVFQSLMGNNKKDVAKIILTASGGPFRGRKKEELRNVT 189          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PSEU5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas stutzeri (strain A1501) GN=dxr PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.614e-34
Identity = 79/187 (42.25%), Postives = 112/187 (59.89%), Query Frame = 3
Query:  243 PKPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEVALRRIILTASGGAFRD 788
            P  I++LG+TGSIG  TLD+VA H D++ V AL   S +  L     + +P+   V +++    +++ L        +L GE G+ E A HP+   V+  IVG AGLKPT+AA+++GK + LANKE L+  G   +         +LP DSEH+AIFQC+     QGL  V +RRI+LTASGG FR+
Sbjct:    4 PLQITILGATGSIGLSTLDVVARHPDRYDVFALTGFSRLAELRALCLKHRPRYAVVSDQAQARILQDQLHADGVSTRVLDGEGGLSEVAAHPEVDVVMAAIVGAAGLKPTLAAVQSGKRVLLANKEALVMSGALFMQALRDSGAVLLPIDSEHNAIFQCLPTDYSQGLGTVGVRRILLTASGGPFRE 190          
The following BLAST results are available for this feature:
BLAST of EY660252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_DESDG5.546e-3545.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_AGRT55.546e-3543.811-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOCS7.243e-3541.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSEP17.243e-3541.121-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACP27.243e-3544.691-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_STRAW9.460e-3545.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NITMU9.460e-3539.691-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACSU9.460e-3544.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOTH1.235e-3445.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSEU51.614e-3442.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660252 ID=EY660252; Name=EY660252; organism=Citrus sinensis; type=EST; length=889bp
TTCCAAGACCCACGTGTCCGGGCATTGATGTCAAAAACCCAGCTGAAATC
AAGGCTCTCTCTTTCTTGGAGACAACCAGGTCATATCACCCCCTCCCCAA
GCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGT
TTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCA
GGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCC
AATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACA
TAGTTGCGGAGCATGAAGATAAATTCATAGTTGTGGCACTGGCAGCTGGT
TCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGT
AGTTGCTGTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGG
CTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATT
GAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGG
TTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATA
TAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTT
CCTCTAGCTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACA
TTCTGCCATATTTCAGTGTATTCAAGGCTTGCCTGAGGTTGCACTTCGGC
GCATTATTTTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCCGTGAGA
AACATGAAGAATTTAAGTGGCTGATGCTTGGACCTTCTAACTGGAGTATG
GGAAAAAATTATTGTCATTCTGCTCCCTTTTTACAAGAT
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