EY660252

Overview
NameEY660252
Unique NameEY660252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig798 contig Csv1_Contig798:54..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_ALKOO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=dxr PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.317e-44
Identity = 94/189 (49.74%), Postives = 129/189 (68.25%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKN 812
            K IS+LGSTGSIGTQTLD+V  H +KF +VAL+A  NI  + +Q+  F P++VAV +    + +    A + +K ++++G +G+IE A    A  VVT +VG  GL PTV AI  GK IALANKETL+  G  +   A KH ++I+P DSEHSAIFQC+QG     + RIILTASGGAFR+W  +++++
Sbjct:    2 KNISILGSTGSIGTQTLDVVRNHPEKFKIVALSASGNIDAIENQIHEFHPEIVAVFHREKAEILS---ARIGKKVKVVSGIEGLIEVATLDSADIVVTSVVGSIGLIPTVEAIRCGKTIALANKETLVVAGELIKKEAEKHKVQIIPVDSEHSAIFQCLQGEDIHNISRIILTASGGAFRNWEKQDIQH 187          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PROVI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dxr PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.246e-44
Identity = 94/188 (50.00%), Postives = 128/188 (68.09%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMK 809
            + +S+LGSTGSIG  TLD+V  H++ F VV LA G ++  LA+Q+K F+P +V+VR+E+  DE+K  L   + +PEI+ G +G    A    +  VV+ IVG AGL PT+ AI+AGKDIALANKETL+  G  V  L  ++ +++LP DSEHSAIFQ + G     + RIILTASGG FR+ P+  MK
Sbjct:    2 RALSILGSTGSIGLSTLDVVRRHKESFSVVGLAEGHDVHALAEQIKEFRPTIVSVRDENAADELKTLLGPAD-RPEIVHGIEGAGTVAAAEGSDMVVSAIVGAAGLTPTIKAIKAGKDIALANKETLVVAGQLVSDLVKQNGVELLPVDSEHSAIFQSLLGHRAEDVERIILTASGGPFRNTPLEEMK 188          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_EUBE2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=dxr PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.246e-44
Identity = 95/190 (50.00%), Postives = 134/190 (70.53%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNL 815
            K +S+LGSTGSIGTQTLD++  + D   VVALAAG+ ++ LA+QV+ FKPQ+V +  E L+ E+K  + +++ K  I++G++G+IEAA    A  VVT +VG  G+ PTV AI+A KDIALANKETL+  G  ++ LA + N+ I P DSEHSAIFQC+ G     + +I+LTASGG FR     +++N+
Sbjct:    2 KNVSILGSTGSIGTQTLDVIRRNAD-INVVALAAGTRVSDLAEQVREFKPQLVCIGKEELVPELKTLIGDMDVK--IVSGDEGLIEAATIESAEIVVTAVVGMMGITPTVEAIKAHKDIALANKETLVCAGHIIMSLAKECNVNIYPVDSEHSAIFQCLNGERRGEIEKILLTASGGPFRGKKRADLENV 188          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_SYMTH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Symbiobacterium thermophilum GN=dxr PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.832e-44
Identity = 96/194 (49.48%), Postives = 130/194 (67.01%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV--EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLSG 821
            K I++LGSTGSIGTQ LD++  H  +F VVALAAG  +  LA+Q  RF+P +++V +      ++  L     + +PEI  G +G+I AA HP++  V+T +VG  G++PT+AAIEAGKDIALANKETL+A G  V   A    +K+LP DSEHSAIFQ + G    ++RRI+LTASGG     P R  K+L+G
Sbjct:    3 KGIAILGSTGSIGTQALDVIDHHPGRFRVVALAAGRQVERLAEQALRFRPALLSVADADAAAALRALLLAEAGDYRPEIAWGREGLIRAATHPESGLVLTSVVGAMGVEPTLAAIEAGKDIALANKETLVAAGELVTAAAQARGVKLLPVDSEHSAIFQSLAGADPGSVRRILLTASGG-----PFRGRKDLTG 191          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_GEOMG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxr PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.536e-44
Identity = 94/191 (49.21%), Postives = 131/191 (68.59%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K +++LGSTGSIGT TL+IVA H D+F V+AL AGSN+ LL  QV+ F+P++V+V    L  ++   L+  + KPEI  G  G+I AA   +A  VV  IVG AGL PT AAI+AGKD+ALANKETL+  G  ++ L  ++ +++ P DSEHSA+FQ ++G     ++RIILTASGG F + P+  +  +S
Sbjct:    2 KKLTILGSTGSIGTSTLEIVAAHPDRFQVIALTAGSNLELLKQQVEVFRPRLVSVLTADLARQLDRMLS--DPKPEIHHGIPGLIAAATAGEADVVVAAIVGAAGLVPTAAAIKAGKDVALANKETLVTAGRIMMDLVRENGVRLYPVDSEHSAVFQSLEGQSGKDVKRIILTASGGPFLNLPLDRLSRVS 190          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_GEOLS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=dxr PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.536e-44
Identity = 92/191 (48.17%), Postives = 129/191 (67.54%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K I++LGSTGSIG  TL+IVA H DKF V++L+   N+ LLA Q+++F+P++ AV + + +  +KE L+ VE   E+  G +G+  AA  P    VV  IVG AGL PT AAI AG D+ALANKETL+  G   + L  +H +K+ P DSEHSAIFQ I+G     + +IILTASGG FR+ P+  +++++
Sbjct:    2 KQIAILGSTGSIGVSTLEIVAAHPDKFRVLSLSGAKNLDLLARQIRQFRPRLAAVADPADIPRLKELLSGVEV--ELTGGVEGLCAAATAPGVQMVVAAIVGAAGLVPTAAAIRAGIDVALANKETLVTAGHLFMELVERHKVKLYPVDSEHSAIFQSIEGHRSQDITKIILTASGGPFRETPLEKLQSVT 190          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_BACCQ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus cereus (strain Q1) GN=dxr PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.536e-44
Identity = 91/181 (50.28%), Postives = 123/181 (67.96%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRD 788
            K IS+LG++GSIGTQTLD++  H D+F +VA +AG NI      ++ F PQ+V+V+ E   D +K  L  V    +++ G +G++E A HPDA  VV  +VG  GL PT+ AIEA K I +ANKETL+  G  V+  A KHN+ +LP DSEHSAIFQC+ G  E  + R+I+TASGG+FRD
Sbjct:    2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSAGKNIDYAVKVIQEFSPQIVSVQREE--DVLK--LQAVSGNTKVVYGSEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIGIANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCLNGENEKRISRLIITASGGSFRD 178          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR2_BACCR (1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dxr2 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.536e-44
Identity = 91/181 (50.28%), Postives = 123/181 (67.96%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRD 788
            K IS+LG++GSIGTQTLD++  H D+F +VA + G NI      ++ F PQ+V+V+ E   D +K  L +V    +I+ G +G++E A HPDA  VV  +VG  GL PT+ AIEA K I +ANKETL+  G  V+  A KHN+ +LP DSEHSAIFQC+ G  E  + R+I+TASGG+FRD
Sbjct:    2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSVGKNIDYAVKVIQEFSPQIVSVQREE--DVLK--LQSVSGNTKIVYGSEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIGIANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCLNGENEKRISRLIITASGGSFRD 178          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CLOPH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=dxr PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.536e-44
Identity = 97/190 (51.05%), Postives = 128/190 (67.37%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNL 815
            K ISVLGSTGSIGTQTL++V  ++D   V ALAA SNITLL +Q++ F P++V V +     E+K+ ++++E   E  AG  G+I  A    A  VV+ +VG  G+KP + AI  GKDIA ANKETL+  G  ++PL  KHN+ +LP DSEHSAIFQC+QG     + RIILTASGG FR   +  +KN+
Sbjct:    2 KIISVLGSTGSIGTQTLEVVRNNKD-LKVSALAASSNITLLEEQIREFHPKLVCVYDREKALELKKRVSDLEVTVE--AGMDGLIACATEESADIVVSAVVGMIGIKPVMEAILRGKDIAFANKETLVTAGHLIMPLVKKHNVNLLPVDSEHSAIFQCLQGNESSTVSRIILTASGGPFRGKSLAELKNV 188          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PELLD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelodictyon luteolum (strain DSM 273) GN=dxr PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.115e-43
Identity = 93/188 (49.47%), Postives = 126/188 (67.02%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMK 809
            + +S+LGSTGSIG  TLD+V +H D+F +V LA G ++ +LA+Q++ F P +V+VR+    + +K  L    + PEI  G +G    A    +  VV+ IVG AGL PTV AI+AGKDIALANKETL+  G  V  L  KHN+++LP DSEHSAIFQ +QG  +  + RIILTASGG FR+    +M+
Sbjct:    2 RALSILGSTGSIGLSTLDVVRQHPDRFKIVGLAEGHDVNMLAEQIREFNPSIVSVRDAGSAELLKTLLGT--DLPEICHGIEGAGTVAAAEGSDMVVSAIVGAAGLTPTVKAIKAGKDIALANKETLVVAGQLVSDLVKKHNVRLLPVDSEHSAIFQSLQGHRQEDVERIILTASGGPFRNSSFADME 187          
The following BLAST results are available for this feature:
BLAST of EY660252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_ALKOO1.317e-4449.741-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROVI2.246e-4450.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EUBE22.246e-4450.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYMTH3.832e-4449.481-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOMG6.536e-4449.211-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOLS6.536e-4448.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACCQ6.536e-4450.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR2_BACCR6.536e-4450.281-deoxy-D-xylulose 5-phosphate reductoisomerase 2 ... [more]
DXR_CLOPH8.536e-4451.051-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PELLD1.115e-4349.471-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660252 ID=EY660252; Name=EY660252; organism=Citrus sinensis; type=EST; length=889bp
TTCCAAGACCCACGTGTCCGGGCATTGATGTCAAAAACCCAGCTGAAATC
AAGGCTCTCTCTTTCTTGGAGACAACCAGGTCATATCACCCCCTCCCCAA
GCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGT
TTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCA
GGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCC
AATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACA
TAGTTGCGGAGCATGAAGATAAATTCATAGTTGTGGCACTGGCAGCTGGT
TCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGT
AGTTGCTGTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGG
CTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATT
GAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGG
TTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATA
TAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTT
CCTCTAGCTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACA
TTCTGCCATATTTCAGTGTATTCAAGGCTTGCCTGAGGTTGCACTTCGGC
GCATTATTTTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCCGTGAGA
AACATGAAGAATTTAAGTGGCTGATGCTTGGACCTTCTAACTGGAGTATG
GGAAAAAATTATTGTCATTCTGCTCCCTTTTTACAAGAT
back to top