EY660252

Overview
NameEY660252
Unique NameEY660252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig798 contig Csv1_Contig798:54..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_GEOKA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacillus kaustophilus GN=dxr PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.384e-40
Identity = 90/191 (47.12%), Postives = 121/191 (63.35%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K IS+LG++GSIGTQTLD++  H D+F + A + G NI      +  F P +VAV +    D  K        +  I+ GE+G+IEAA  P A  VVT +VG  GL PT+ AIEAGK IALANKETL+  G  V+  A +  + +LP DSEHSAIFQC+QG     + ++ILTASGG+FRD   R + +++
Sbjct:    2 KYISILGASGSIGTQTLDVIRAHPDEFRLAAASVGKNIEAARRLIAEFSPSLVAVADR---DAYKVLYREYRGRTTIVYGEEGLIEAAVCPQADVVVTAVVGSVGLVPTLKAIEAGKAIALANKETLVVAGHLVMAAAKRRGVPLLPVDSEHSAIFQCLQGERMEHVDKLILTASGGSFRDKTRRELAHVT 189          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CLOPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium perfringens (strain SM101 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.384e-40
Identity = 85/191 (44.50%), Postives = 127/191 (66.49%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K IS+LG TGSIGTQTLD++  H++ F +V + A  NI L  D +K F P+ VA+ +E    ++ + + +   K E++ G +G+++ A   +   VVT +VG  GLKPTV AI  GK+IALANKETL+  G  V+  A ++ +KIL  DSEHSAIFQ +QG     + +I+LTASGG FR + ++++K+++
Sbjct:    2 KRISILGVTGSIGTQTLDVLRFHKEDFELVGITANRNIELTMDIIKEFSPKYVAINHEESYKKLVDLVKSEGLKCEVIYGMEGLVKVATLDEIDIVVTSVVGMIGLKPTVEAIRKGKNIALANKETLVVAGELVMREAKENGVKILAVDSEHSAIFQSLQGNAHNKIDKILLTASGGPFRGFTIKDLKSVT 192          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CLOCE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=dxr PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.767e-40
Identity = 94/191 (49.21%), Postives = 121/191 (63.35%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K IS++GSTGSIG QTL+       K  V AL+A SNI LL  QV  FKP VV+V N  L  E+   L       E+L G+ G+     H +A TVVT +VG AGL PT+ AI   K+IALANKETL+  G  V+  A K+N+KI P DSEHSAI+QC+ G  +  + +IILTASGG FR   ++ +KN++
Sbjct:    3 KIISIIGSTGSIGRQTLEAAKNLGIK--VAALSANSNIDLLEKQVHEFKPDVVSVGNSELAKEMSNRLQGFGI--EVLWGQDGMKRVVEHSEADTVVTSVVGTAGLIPTIHAIRHKKNIALANKETLVTAGQLVMEDAKKNNVKIFPVDSEHSAIYQCLLGNKDKQVEKIILTASGGPFRGKNIKELKNIT 189          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PARUW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Protochlamydia amoebophila (strain UWE25) GN=dxr PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.276e-39
Identity = 84/191 (43.98%), Postives = 125/191 (65.45%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K I++LGSTGSIG  TL +    +++  VVA+AA  NI LL  Q K F P ++AV N +   E+++ L        +LAG +G++ AA + +A  V++ + G  GL+PT+ AI+AGKD+ LANKE L++GG  ++ L  + NI +LP DSEHSAIFQC+ G    +++RIILT+SGG FR W    ++ ++
Sbjct:    2 KHIAILGSTGSIGKNTLQVARHLKERIKVVAIAARENIDLLEAQSKEFCPDIIAVFNNAKAYELQKRLPG----KTVLAGMEGLLAAASYSEADLVISAMTGTMGLQPTIEAIKAGKDVGLANKEALVSGGAIIMKLVKEKNINLLPIDSEHSAIFQCLNGEALKSVQRIILTSSGGPFRTWTQEQLETVT 188          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_GEOBB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=dxr PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.276e-39
Identity = 85/182 (46.70%), Postives = 115/182 (63.19%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDW 791
            K +++LGSTGSIG  TLD+V  + D F VVAL AG+N+ LL  Q++ F P +V+V        +  +L    +KPEI+ G +G+I AA   +   VV  IVG AGL PT AAI AGKD+ALANKETL+  G  V+ +  +  + + P DSEH A+FQ + G     + R+ILTASGG F +W
Sbjct:    2 KNLTILGSTGSIGVSTLDVVKAYPDMFRVVALTAGNNLELLKTQIETFSPDLVSVLTAEKAQALSRSLTG--KKPEIMHGVEGMIAAATASETTMVVAAIVGAAGLVPTTAAIMAGKDVALANKETLVTAGHLVMQMVREKKVNLYPVDSEHCAVFQSMAGHRSQDIARVILTASGGPFLNW 181          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_DESPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfotalea psychrophila GN=dxr PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.331e-39
Identity = 88/179 (49.16%), Postives = 115/179 (64.25%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAF 782
            K IS+LG+TGSIGT  L++V +  D++ +VA+AAG NI L A Q++ F P +V+V +E     ++E L     K  IL G  G  E A +P A   ++ IVG AGL PT+AAIEAGKDI LANKETL+  G  V+  A +  + +LP DSEHSAIFQ +       L +IILTASGG F
Sbjct:    2 KKISLLGATGSIGTSVLEVVRKFSDQYRIVAMAAGRNIDLFARQIEEFSPDLVSVLDEEYAHCLQERLGGFRGK--ILWGNAGNEEVAAYPSASITISAIVGAAGLLPTLAAIEAGKDIGLANKETLVMAGKIVMERARRKGVALLPVDSEHSAIFQALHAGKRADLAKIILTASGGPF 178          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CLOB6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=dxr PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.331e-39
Identity = 79/180 (43.89%), Postives = 121/180 (67.22%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFR 785
            K I++LG+TGSIGTQTLD++ + +++  +VA++A  +   + + +K FKP+   +  E+    +++   N +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G  +  ++ II+TASGG FR
Sbjct:    2 KNITILGATGSIGTQTLDVIRKEKEELKLVAISANKSYKKVIEIIKEFKPKYAVLMEENAFKIVEDFCVNSKIDTKVLKGMEGMIYISTLEEINTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRGNKKEEVKNIIVTASGGPFR 181          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_BACTN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides thetaiotaomicron GN=dxr PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.331e-39
Identity = 85/191 (44.50%), Postives = 122/191 (63.87%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K I++LGSTGSIGTQ L ++ EH D +   AL A + + LL  Q ++F+P+VV + NE    ++KEAL+++  K  + AG   V +         V+T +VG AGLKPT+ AI A K IALANKETL+  G  +  LA +++  ILP DSEHSA+FQC+ G     + ++ILTASGG FR   +  +K+++
Sbjct:   10 KQIAILGSTGSIGTQALQVIEEHPDLYEAYALTANNRVELLIAQARKFQPEVVVIANEEKYAQLKEALSDLPIK--VYAGIDAVCQIVEAGPVDMVLTAMVGYAGLKPTINAIRAKKAIALANKETLVVAGELINQLAQQYHTPILPVDSEHSAVFQCLAGEVGNPIEKVILTASGGPFRTCTLEQLKSVT 198          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_THETN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter tengcongensis GN=dxr PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.080e-38
Identity = 85/191 (44.50%), Postives = 130/191 (68.06%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K + +LGSTGSIG QTLD+V   +++F +V L   +N++LL+ Q+K F+P+VVAV++E    +++E   N++E  E+L G++G+ E  ++ +A  VV  + G AGL PTV AI+ GK+IALANKE L+  G  V+ L  +  I+ LP DSEHSAI QC++G  +  +  +ILTASGG FR    +++ N++
Sbjct:    2 KKLIILGSTGSIGRQTLDVVRSLKEEFEIVGLTGYNNVSLLSKQIKEFRPKVVAVKDEEKARKLRE---NLDEPIEVLTGKEGLKEIVKY-EADMVVVAVEGIAGLIPTVEAIKLGKNIALANKEVLVTAGEIVMGLVKEKKIEFLPVDSEHSAILQCLKGNNKREVSNLILTASGGPFRGKKKKDLVNVT 188          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_BACFR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides fragilis GN=dxr PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.080e-38
Identity = 84/191 (43.98%), Postives = 120/191 (62.83%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K I++LGSTGSIGTQ L ++ EH + + V AL A + + LL  Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+T +VG AGLKPT+ AI AGK IALANKETL+  G  +  LA ++   ILP DSEHSA+FQC+ G     + ++ILTASGG FR   +  +K ++
Sbjct:    7 KQIAILGSTGSIGTQALQVIEEHPELYEVYALTANNKVDLLIAQARKFMPEAVVIANEEKYAQLKEALSDLPVK--VYAGAAALCQIVESGPIDVVLTAMVGYAGLKPTMNAIRAGKAIALANKETLVVAGELINQLARQYRTPILPVDSEHSAVFQCLAGEVGNPIEKVILTASGGPFRTCTMEQLKTVT 195          
The following BLAST results are available for this feature:
BLAST of EY660252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_GEOKA4.384e-4047.121-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOPS4.384e-4044.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOCE9.767e-4049.211-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PARUW1.276e-3943.981-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOBB1.276e-3946.701-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESPS6.331e-3949.161-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOB66.331e-3943.891-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACTN6.331e-3944.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THETN1.080e-3844.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACFR1.080e-3843.981-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660252 ID=EY660252; Name=EY660252; organism=Citrus sinensis; type=EST; length=889bp
TTCCAAGACCCACGTGTCCGGGCATTGATGTCAAAAACCCAGCTGAAATC
AAGGCTCTCTCTTTCTTGGAGACAACCAGGTCATATCACCCCCTCCCCAA
GCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGT
TTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCA
GGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCC
AATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACA
TAGTTGCGGAGCATGAAGATAAATTCATAGTTGTGGCACTGGCAGCTGGT
TCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGT
AGTTGCTGTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGG
CTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATT
GAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGG
TTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATA
TAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTT
CCTCTAGCTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACA
TTCTGCCATATTTCAGTGTATTCAAGGCTTGCCTGAGGTTGCACTTCGGC
GCATTATTTTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCCGTGAGA
AACATGAAGAATTTAAGTGGCTGATGCTTGGACCTTCTAACTGGAGTATG
GGAAAAAATTATTGTCATTCTGCTCCCTTTTTACAAGAT
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