EY660252

Overview
NameEY660252
Unique NameEY660252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_BACFN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=dxr PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.080e-38
Identity = 84/191 (43.98%), Postives = 120/191 (62.83%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K I++LGSTGSIGTQ L ++ EH + + V AL A + + LL  Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+T +VG AGLKPT+ AI AGK IALANKETL+  G  +  LA ++   ILP DSEHSA+FQC+ G     + ++ILTASGG FR   +  +K ++
Sbjct:    7 KQIAILGSTGSIGTQALQVIEEHPELYEVYALTANNKVDLLIAQARKFMPEAVVIANEEKYAQLKEALSDLPVK--VYAGAAALCQIVESGPIDVVLTAMVGYAGLKPTMNAIRAGKAIALANKETLVVAGELINQLARQYRTPILPVDSEHSAVFQCLAGEVGNPIEKVILTASGGPFRTCTMEQLKTVT 195          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_STRCO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Streptomyces coelicolor GN=dxr PE=3 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.842e-38
Identity = 91/188 (48.40%), Postives = 122/188 (64.89%), Query Frame = 3
Query:  237 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA----NVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFR 785
            DGPK + VLGSTGSIGTQ +D+V  + D+F V AL+A G  + LLA+Q  R K + VAV  E ++  ++EAL       E  PEILAG +   + A   D  TV+ GI G  GL PT+AA+EAG+ +ALANKE+LI GGP V  LA     +I+P DSEH+A+FQ +       +R++++TASGG FR
Sbjct:   21 DGPKDVVVLGSTGSIGTQAIDLVLRNPDRFRVTALSANGGRVALLAEQAYRLKARTVAVAREDVVPALREALTAQYGTGEPLPEILAGPEAATQLAAS-DCHTVLNGITGSIGLAPTLAALEAGRTLALANKESLIVGGPLVKALAKPG--QIIPVDSEHAALFQALAAGTRADVRKLVVTASGGPFR 205          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_EXISA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=dxr PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.842e-38
Identity = 82/181 (45.30%), Postives = 117/181 (64.64%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRD 788
            K IS++G TGSIG QT D++ +H D F + A A G+N+ +  + + R +P+ V+  +  +L+++K  L     +P    G +G+ E A    A  VVT +VG  GL+PT+AAI+AGKDIALANKETL+  G  V     +H + +LP DSEHSAI+QC+ G     + +IILTASGG+FRD
Sbjct:    2 KRISLIGGTGSIGVQTCDVIEQHPDLFELEAYAFGTNVEVATEWINRLRPKYVSATSIEVLEQLKPRLTY---EPLYFIGPEGLKECATAERADIVVTAVVGAVGLEPTLAAIQAGKDIALANKETLVTAGHLVKAAVKEHGVNLLPVDSEHSAIYQCLNGERREDVSKIILTASGGSFRD 179          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PHOLL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Photorhabdus luminescens subsp. laumondii GN=dxr PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.406e-38
Identity = 92/200 (46.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALR-------------RIILTASGGAFRDWPVRNM 806
            K +++LGSTGS+G  TL +V  + DKF V ALAAG NI ++A+Q   F+PQ  A+ +E    E+++ L     K E+  GEQ   + A   D   V++GIVG AGL PT+AAI AGK I LANKE+LI  G F +    KHN ++LP DSEH+AIF   Q LPEV  R              IILT SGG FR  P+  +
Sbjct:    2 KRLTILGSTGSVGKSTLTVVRNNPDKFKVTALAAGKNIQVMAEQCLEFRPQYAAMADEVSAKELRQLLIEQGCKTEVFFGEQAACDLAALNDVDQVMSGIVGVAGLLPTLAAIRAGKQILLANKESLITSGRFFMDAVAKHNAQLLPIDSEHNAIF---QSLPEVIQRNLGRGDLKQYGIANIILTGSGGPFRHTPLEQL 198          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_PSE14 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dxr PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.142e-38
Identity = 84/198 (42.42%), Postives = 121/198 (61.11%), Query Frame = 3
Query:  240 GPKPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-----QGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            GP+ I++LG+TGSIG  TLD+VA H  ++ V AL   S +  L     R  PQ   V ++ +  ++++ LA       +L GE G+ E A HP    V+  IVG AGL+PT+AA+EAGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+     +GL  V +RRI+LTASGG FR+ P+  ++N++
Sbjct:    3 GPQHITILGATGSIGLSTLDVVARHPSRYQVFALTGFSRLDELLALCVRHTPQYAVVPDQFVARKLQDDLAAAVLDTRVLVGEGGLCEVAAHPRVDAVMAAIVGAAGLRPTLAAVEAGKKVLLANKEALVMSGDLFMQAVRQSGAVLLPIDSEHNAIFQCLPGDFARGLGAVGVRRIMLTASGGPFRETPLEQLQNVT 200          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CLOBK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Okra / Type B1) GN=dxr PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.142e-38
Identity = 78/180 (43.33%), Postives = 121/180 (67.22%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFR 785
            K I++LG+TGSIGTQTLD++ + +++  +VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G  +  ++ II+TASGG FR
Sbjct:    2 KNITILGATGSIGTQTLDVIRKEKEELKLVAISANKSYKKVIEIIKEFKPKYAVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRGNKKEEVKNIIVTASGGPFR 181          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_ANASK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaeromyxobacter sp. (strain K) GN=dxr PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.142e-38
Identity = 85/183 (46.45%), Postives = 116/183 (63.39%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWP 794
            K +++LGSTGSIG Q LD+V    D+F VV LAAG N   L +Q++RF+P+VV+V +E+    ++   A      E+L+G+ G +  A HPDA  V+  I G AGL+ T AAIEAGK + LANKE+++  G  ++  A    + ILP DSEHSAI Q + G     +RR+ILTASGG  R  P
Sbjct:    2 KRVAILGSTGSIGVQALDVVGRFPDRFEVVGLAAGRNAPRLLEQIRRFRPRVVSVCDEAAARAVR---AEAPPGTEVLSGDAGAVAVASHPDAAFVLAAISGGAGLRSTAAAIEAGKPVGLANKESMVLAGELLMARAAAKGVPILPVDSEHSAIHQSLVGHNRGEVRRLILTASGGPLRCTP 181          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_ANAD2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=dxr PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.142e-38
Identity = 85/183 (46.45%), Postives = 116/183 (63.39%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWP 794
            K +++LGSTGSIG Q LD+V    D+F VV LAAG N   L +Q++RF+P+VV+V +E+    ++   A      E+L+G+ G +  A HPDA  V+  I G AGL+ T AAIEAGK + LANKE+++  G  ++  A    + ILP DSEHSAI Q + G     +RR+ILTASGG  R  P
Sbjct:    2 KRVAILGSTGSIGVQALDVVGRFPDRFEVVGLAAGRNAPRLLEQIRRFRPRVVSVCDEAAARAVR---AEAPPGTEVLSGDAGAVAVASHPDAAFVLAAISGGAGLRSTAAAIEAGKPVGLANKESMVLAGELLMARAAAKGVAILPVDSEHSAIHQSLVGHNRGEVRRLILTASGGPLRCTP 181          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CLOBL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=dxr PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.103e-38
Identity = 78/180 (43.33%), Postives = 120/180 (66.67%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFR 785
            K I++LG+TGSIGTQTLD++   +++  +VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G  +  ++ II+TASGG FR
Sbjct:    2 KNITILGATGSIGTQTLDVIRREKEELKLVAISANKSYKKVIEIIKEFKPKYTVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRGNKKEEVKNIIVTASGGPFR 181          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CLOBJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=dxr PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.103e-38
Identity = 78/180 (43.33%), Postives = 120/180 (66.67%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFR 785
            K I++LG+TGSIGTQTLD++   +++  +VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G  +  ++ II+TASGG FR
Sbjct:    2 KNITILGATGSIGTQTLDVIRREKEELKLVAISANKSYKKVIEIIKEFKPKYAVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRGNKKEEVKNIIVTASGGPFR 181          
The following BLAST results are available for this feature:
BLAST of EY660252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_BACFN1.080e-3843.981-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_STRCO1.842e-3848.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EXISA1.842e-3845.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PHOLL2.406e-3846.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSE143.142e-3842.421-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBK3.142e-3843.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANASK3.142e-3846.451-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAD23.142e-3846.451-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBL4.103e-3843.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBJ4.103e-3843.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660252 ID=EY660252; Name=EY660252; organism=Citrus sinensis; type=EST; length=889bp
TTCCAAGACCCACGTGTCCGGGCATTGATGTCAAAAACCCAGCTGAAATC
AAGGCTCTCTCTTTCTTGGAGACAACCAGGTCATATCACCCCCTCCCCAA
GCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGT
TTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCA
GGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCC
AATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACA
TAGTTGCGGAGCATGAAGATAAATTCATAGTTGTGGCACTGGCAGCTGGT
TCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGT
AGTTGCTGTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGG
CTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATT
GAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGG
TTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATA
TAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTT
CCTCTAGCTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACA
TTCTGCCATATTTCAGTGTATTCAAGGCTTGCCTGAGGTTGCACTTCGGC
GCATTATTTTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCCGTGAGA
AACATGAAGAATTTAAGTGGCTGATGCTTGGACCTTCTAACTGGAGTATG
GGAAAAAATTATTGTCATTCTGCTCCCTTTTTACAAGAT
back to top