EY660243 | Citrus Genome Database

Overview


Name	EY660243
Unique Name	EY660243
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	612

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY660243 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.048e-20
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2

Query:  128 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 247
            HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  393 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432

HSP 2 Score: 32.7278 bits (73), Expect = 2.048e-20
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 3

Query:   69 KGVCMISNSTSVAEVFLRL 125
            + VCMISNST++AEVF RL
Sbjct:  373 RAVCMISNSTAIAEVFSRL 391

[Close]

BLAST of EY660243 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.464e-20
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2

Query:  128 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 247
            HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  393 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432

HSP 2 Score: 31.9574 bits (71), Expect = 3.464e-20
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 3

Query:   69 KGVCMISNSTSVAEVFLRL 125
            + VCMISNST++AEVF R+
Sbjct:  373 RAVCMISNSTAIAEVFSRM 391

[Close]

BLAST of EY660243 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.464e-20
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2

Query:  128 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 247
            HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  393 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432

HSP 2 Score: 31.9574 bits (71), Expect = 3.464e-20
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 3

Query:   69 KGVCMISNSTSVAEVFLRL 125
            + VCMISNST++AEVF R+
Sbjct:  373 RAVCMISNSTAIAEVFSRM 391

[Close]

BLAST of EY660243 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.464e-20
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2

Query:  128 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 247
            HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  393 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432

HSP 2 Score: 31.9574 bits (71), Expect = 3.464e-20
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 3

Query:   69 KGVCMISNSTSVAEVFLRL 125
            + VCMISNST++AEVF R+
Sbjct:  373 RAVCMISNSTAIAEVFSRI 391

[Close]

BLAST of EY660243 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.464e-20
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2

Query:  128 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 247
            HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  393 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432

HSP 2 Score: 31.9574 bits (71), Expect = 3.464e-20
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 3

Query:   69 KGVCMISNSTSVAEVFLRL 125
            + VCMISNST++AEVF R+
Sbjct:  373 RAVCMISNSTAIAEVFSRI 391

[Close]

BLAST of EY660243 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.464e-20
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2

Query:  128 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 247
            HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  393 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432

HSP 2 Score: 31.9574 bits (71), Expect = 3.464e-20
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 3

Query:   69 KGVCMISNSTSVAEVFLRL 125
            + VCMISNSTSV EVF R+
Sbjct:  373 RAVCMISNSTSVVEVFSRI 391

[Close]

BLAST of EY660243 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.464e-20
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2

Query:  128 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 247
            HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  393 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432

HSP 2 Score: 31.9574 bits (71), Expect = 3.464e-20
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 3

Query:   69 KGVCMISNSTSVAEVFLRL 125
            + VCMISNST++AEVF R+
Sbjct:  373 RAVCMISNSTAIAEVFSRI 391

[Close]

BLAST of EY660243 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.464e-20
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2

Query:  128 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 247
            HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  392 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 431

HSP 2 Score: 31.9574 bits (71), Expect = 3.464e-20
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 3

Query:   69 KGVCMISNSTSVAEVFLRL 125
            + VCMISNST++AEVF R+
Sbjct:  372 RAVCMISNSTAIAEVFSRI 390

[Close]

BLAST of EY660243 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.464e-20
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2

Query:  128 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 247
            HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  393 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432

HSP 2 Score: 31.9574 bits (71), Expect = 3.464e-20
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 3

Query:   69 KGVCMISNSTSVAEVFLRL 125
            + VCMISNST++AEVF R+
Sbjct:  373 RAVCMISNSTAIAEVFSRI 391

[Close]

BLAST of EY660243 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.464e-20
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2

Query:  128 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 247
            HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  393 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432

HSP 2 Score: 31.9574 bits (71), Expect = 3.464e-20
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 3

Query:   69 KGVCMISNSTSVAEVFLRL 125
            + VCMISNSTSV EVF R+
Sbjct:  373 RAVCMISNSTSVVEVFSRI 391

The following BLAST results are available for this feature:

BLAST of EY660243 vs. ExPASy Swiss-Prot

BLAST of EY660243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140


Match Name	E-value	Identity	Description
TBA_CHLVU	2.048e-20	100.00	Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ...	[more]
TBA_TOXGO	3.464e-20	100.00	Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1	[more]
TBA_NEOCA	3.464e-20	100.00	Tubulin alpha chain OS=Neospora caninum GN=TUBA PE...	[more]
TBA1_NAEGR	3.464e-20	100.00	Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=...	[more]
TBA13_NAEGR	3.464e-20	100.00	Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB...	[more]
TBA_WHEAT	3.464e-20	100.00	Tubulin alpha chain OS=Triticum aestivum GN=TUBA P...	[more]
TBA_OXYGR	3.464e-20	100.00	Tubulin alpha chain OS=Oxytricha granulifera PE=3 ...	[more]
TBA_EUPVA	3.464e-20	100.00	Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1	[more]
TBA_EUPOC	3.464e-20	100.00	Tubulin alpha chain OS=Euplotes octocarinatus PE=3...	[more]
TBA3_HORVU	3.464e-20	100.00	Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-101-020-B01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY660243 ID=EY660243; Name=EY660243; organism=Citrus sinensis; type=EST; length=612bp
CAGTGGTACCCTGCGGNACCTCTCCGGAATCCCTTCTCGACGAGGCTTCC
GGACCATGCCCTGTCTAAAAAGGTGTTTGCATGATCTCCAACTCCACCAG
TGTGGCAGAGGTGTTCTTGCGTCTGNACACAAGTTTGATCTTATGTATGC
AAAGCGTGCTTTCGTCCACTGGTATGTTGGCGAGGGTATGGAAGAAGGAG
AGTTCTCTGAGGCTCGTGAGGATCTTGCTGCCCTTGAGAAGGATTATGAG
GAGGTGGGTGCAGAGTCTGCCGAGGGCGAGGAAGATTATGGTGAGGAGGA
CTGAGGGATCTAAGTGTGCAATTATCTGTGCGTTTTAGTATGATGTCTTG
TGCTTTAGTGACGCTTCGTGCCTTTATTTTGTGTTGAAAACCTTATTCCT
CTCTTTGATTCTCGCTCAATTTCAAAGCTTGTTGAAATTTGTTATGCTTA
TCAAGTTTATGGGNTCTATATGTTCATGTAATCTTTGACTGTTTGATTTT
GATTGGATTATCTTATTTCAATTTACAACATAGCTTCNGGGGGTTTGTCT
AATATTGGTCGGATATTTACGTCAAATAAAGATAATTGATTTTCAAGAAA
AAAAAAAAAAAA