EY660236

Overview
NameEY660236
Unique NameEY660236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660236 vs. ExPASy Swiss-Prot
Match: PATA2_SOLTU (Patatin group A-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.200e-39
Identity = 85/204 (41.67%), Postives = 123/204 (60.29%), Query Frame = 1
Query:   46 VVLYKIMITNTIAYG---QKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDG-PKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCF 645
            +++  I+ T +  +    + + VLSIDGGG++GIIPGTIL FLE QLQ +D    AR+ADYFD++ GTSTGGL+  M+T P+++ RP  AA +I  FYF+H P IF             S   ++  P YDGKY+  +    LGE  +   LT + I +FD+K  +PVIF+ ++       +A++ D+C   +AAPTY P H F
Sbjct:    9 ILIVMILATTSSTFASLEEMVTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIF------------NSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSAAAAPTYFPPHYF 200          
BLAST of EY660236 vs. ExPASy Swiss-Prot
Match: PAT16_SOLTU (Patatin-16 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.873e-39
Identity = 85/204 (41.67%), Postives = 124/204 (60.78%), Query Frame = 1
Query:   46 VVLYKIMITNTIAYG---QKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDG-PKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCF 645
            +++  I+ T +  +    + + VLSIDGGG++GIIPGTIL FLE QLQ +D    AR+ADYFD++ GTSTGGL+  M+T P+++ RP  AA +I  FYF+H P IF   + + F +             YDGKY+  +    LGE  +   LT + I +FD+K  +PVIF+ ++       +A++ D+C  T+AAPTY P H F
Sbjct:    9 ILIVMILATTSSTFASLEEMVTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFFRK-------------YDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYF 199          
BLAST of EY660236 vs. ExPASy Swiss-Prot
Match: PATD3_SOLTU (Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.401e-39
Identity = 84/204 (41.18%), Postives = 124/204 (60.78%), Query Frame = 1
Query:   46 VVLYKIMITNTIAYG---QKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDG-PKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCF 645
            +++  I+ T +  +    + + VLSIDGGG++GIIPGTIL FLE QLQ +D    AR+ADYFD++ GTSTGGL+ +M+T P+++ RP  AA +I  F+F+H P IF             S   ++  P YDGKY+  +    LGE  +   LT + I + D+K  +PVIF+ ++       +A++ D+C  T+AAPTY P H F
Sbjct:    9 ILIVMILATTSSTFASLEEMVTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIF------------NSSTGQFFGPKYDGKYLMQVLQENLGETRVHQALTEVAISSLDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYF 200          
BLAST of EY660236 vs. ExPASy Swiss-Prot
Match: PAT12_SOLTU (Patatin-12 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.360e-39
Identity = 84/205 (40.98%), Postives = 123/205 (60.00%), Query Frame = 1
Query:   46 VVLYKIMITNTIAYG---QKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDG-PKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCFV 648
            +++  I+ T +  +    + + VLSIDGGG++GIIPGTIL FL  QLQ +D    AR+ADYFD++ GTSTGGL+  M+T P+++ RP  AA +I  FYF+H P IF             S   ++  P YDGKY+  +    LGE  +   LT + I +FD+K  +PVIF+ ++       +A++ D+C  T+AAP Y P H F+
Sbjct:    9 ILIVMILATTSSTFASLEEMVTVLSIDGGGIKGIIPGTILEFLGGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIF------------NSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFI 201          
The following BLAST results are available for this feature:
BLAST of EY660236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PATA2_SOLTU2.200e-3941.67Patatin group A-2 OS=Solanum tuberosum PE=2 SV=1[more]
PAT16_SOLTU2.873e-3941.67Patatin-16 OS=Solanum tuberosum PE=2 SV=1[more]
PATD3_SOLTU6.401e-3941.18Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1[more]
PAT12_SOLTU8.360e-3940.98Patatin-12 OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660236 ID=EY660236; Name=EY660236; organism=Citrus sinensis; type=EST; length=892bp
TTCTCAACCCACGCGTCCGCTTTCTTTTTATCACTAGCACCATTTGTGGT
CTTATACAAAATCATGATTACTAATACCATCGCCTATGGCCAGAAAATAG
CCGTGCTGAGCATTGATGGCGGCGGCGTTAGGGGCATCATTCCTGGCACT
ATTTTGGCCTTTCTTGAATCCCAGCTTCAGGATCTGGACGGACCCAAGGC
GAGAATTGCAGATTATTTCGATATAGTTTCAGGAACAAGCACAGGTGGGC
TAATAGCCACCATGCTTACAGCCCCCGACAAGGACCGCAGACCTATTTTT
GCTGCAAAGGATATCAACAAATTTTATTTTAAGCACTGTCCTGAAATTTT
CCCTCAAGATAGCTGTAAGAATTTTCCAAGATCAGTTACAAGCCCTTTGC
GTAAGTGGGTACGACCAATGTACGATGGGAAGTACATGCGGACTCTTACG
AACAGGATACTAGGAGAAATTACCATCAAAGATACCCTAACAAATTTGAT
CATTCCAACTTTTGACGTCAAGCGGCTTCAGCCAGTGATATTCTCAACCA
ATGATGGAAAAATACATGCTTTGAAGAATGCCCGGCTGGCTGATATGTGC
ATTGGCACCTCTGCAGCTCCCACCTACTTACCAGCGCACTGCTTTGTGGA
CAAAGACCAATTACGGCCGACACAGGTTGTTTTGATCTCATTGATGGGGG
GTTGCGGCAAATGACCCTGAAGTAACTTCTTTTTTGAAACTGGGGCGCCA
TATTGTGGATTGACATTAATTTATAGAAAATTGGATAAATGGGTGAAAGA
TATGAATGGGGAAACCTAGTGGGCATAACCCGCATTTGTTTGAGTTTTAA
ACATAAGCTGAGTCCAAGACATAAACAATAAACCCCGGGAGA
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