EY660228

Overview
NameEY660228
Unique NameEY660228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660228 vs. ExPASy Swiss-Prot
Match: PME38_ARATH (Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.663e-13
Identity = 75/292 (25.68%), Postives = 125/292 (42.81%), Query Frame = 2
Query:   17 CSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKRE---KVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSAGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTXXXXXXXXPXG--GTKRYIIRIKARCYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATXAVXGE 877
            C  T +P  C + +       K + S    +++S       VE    G  K    T   + +   K A  +C++  ++T+  L+++V   +   ++        D++  +S A+TN  TC +  S    + H  ++++   +       N LA+ K M        +     K+  +T         LS G++          +VVVA DGSG++KT             G+ RY+I +K   Y E V V  K  NIM  GDG  +TIITG ++   G +T+KSAT    G+
Sbjct:    8 CDETPHPGECKTLLIK----HKPIRSTTQFLQVS-------VERTLDGAVKAKSDTYFLEPQFGSKQAWEECMDLYEQTIHRLNESVLCPKNVCSRS-------DVQAWLSTALTNLDTCQEEMSELGVSSHSLESITIDVI-------NTLAINKRMEQNG----KEFGISKITMKT---------LSIGEK---------VDVVVAQDGSGDYKTIQEAVNGAGERLKGSPRYVIHVKQGVYEEYVNVGIKSNNIMITGDGIGKTIITGDKSKGRGFSTYKSATFVAEGD 252          
BLAST of EY660228 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.726e-12
Identity = 52/193 (26.94%), Postives = 88/193 (45.60%), Query Frame = 2
Query:  296 KSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSAGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTXXXXXXXXPXGGTKRYIIRIKARCYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATXAVXG 874
            + + +  ++  T +S+ +T+  TC+D        + V   L       E + S A  ++       +      +N +LI   S +   P+WL   D++ L  ++   +VVVA DG+G + T        P    KR++I IK   Y E V +     N+  IGDG+  TIITG+ +  +   T+ +AT A  G
Sbjct:   96 EEMMESEENSHTWLSSVLTSYITCIDEIGEGAYKRRVEPKL-------ENLISRARVVLALFISISLR-----DNTELI---SVIPNGPSWLFHVDKKDLYLNAEIADVVVAKDGTGKYSTVNAAIAAAPQHSQKRFVIYIKTGIYDEIVVIENTKPNLTLIGDGQDLTIITGNLSASNVRRTYNTATVASNG 273          
The following BLAST results are available for this feature:
BLAST of EY660228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
PME38_ARATH2.663e-1325.68Putative pectinesterase/pectinesterase inhibitor 3... [more]
PME30_ARATH1.726e-1226.94Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-H08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660228 ID=EY660228; Name=EY660228; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGCATCATGTAGCAGCACAAGGTACCCGGACTTATGCTTTT
CGGCTATTGCTGCCGTTCCAGAGGCCTCCAAAAAGGTGACAAGCCAAAAG
GACGTTATTGAGATGTCCTTAAACATCACAACAACAGCCGTGGAACACAA
CTACTTCGGGATTCAGAAGCTCTTGAAGAGAACGAATCTCACCAAACGGG
AAAAGGTTGCTCTCCATGACTGTCTTGAGACGATCGATGAGACTCTTGAT
GAGTTACACAAAGCCGTCGAGGATCTTGAGGAGTACCCGAACAAGAAATC
TTTATCACAGCATGCGGATGATCTCAAAACCCTAATGAGTGCCGCGATGA
CCAATCAGGGGACGTGTCTTGATGGGTTCTCTCATGATGATGCTAATAAG
CACGTGCGGGATGCGTTGTCAGCCGGCCAGGTTCATGTTGAGAAGATGTG
TAGCAATGCGCTTGCTATGATCAAGAACATGACTGACACTGACATGATGA
TCATGAGGACTTCAAACAACAGGAAGCTGATAGAGGAGACCAGTACGGTT
GATGGGTGGCCGGCGTGGCTGTCCACCGGAGACAGGAGGCTGTTGCAGTC
CTCGTCGGTGACACCGAACGTGGTGGTGGCAGCAGATGGCAGCGGAAACT
TTAAGACGGTGGCGGCAGCGGTGGCGGCGGCTCCTCANGGAGGCACTAAG
CGGTATATTATTAGGATTAAAGCCCGGTGTTATCGGGAAAATGTTGAGGT
GACAAAGAAGCATAAAAATATAATGTTCATCGGTGACGGGAGGACTAGAA
CTATCATCACAGGAAGTAGAAATGTGGTTGATGGAAGCACAACTTTCAAG
TCTGCTACAGNTGCTGTTNGTGGTGAAAGGATTC
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