EY660219

Overview
NameEY660219
Unique NameEY660219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7546 contig Csv1_Contig7546:1..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660219 vs. ExPASy Swiss-Prot
Match: YKT6_SCHPO (Synaptobrevin homolog ykt6 OS=Schizosaccharomyces pombe GN=ykt6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.403e-12
Identity = 44/148 (29.73%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  252 KNLSRGQNEASRMSIETGPYVFH-YIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNG-AQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 689
            K ++   N   R  +E   YVFH Y     +C +   D+ YP ++A+  L  + +EF   N   + E+ A   +F + DT++ K    YQD +    I ++  EL E   ++ + ++ VL  GEKLD + + S  L+++SR++   AK
Sbjct:   45 KTVAERTNPGQRQDVEQSNYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWESGAVTLSFPELDTYLSK----YQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQSRMFYKSAK 188          
BLAST of EY660219 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.083e-12
Identity = 39/147 (26.53%), Postives = 80/147 (54.42%), Query Frame = 3
Query:  258 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDL 695
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + +++    +A+   ++ E+  IM RN+  V   GEKL+ + + +  L   S  +   +++L
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKYHSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNL 178          
BLAST of EY660219 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 37/147 (25.17%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  258 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDL 695
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + + ++   + +   ++ E+  IM RN+  V   GE+L+ + + +  L   S  +   +++L
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNL 178          
The following BLAST results are available for this feature:
BLAST of EY660219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
YKT6_SCHPO1.403e-1229.73Synaptobrevin homolog ykt6 OS=Schizosaccharomyces ... [more]
VAMP7_CHICK4.083e-1226.53Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_MOUSE5.897e-1125.17Vesicle-associated membrane protein 7 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660219 ID=EY660219; Name=EY660219; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGCTCTTTTCTCTCTGTCGATCCTTGTCTTCTCTCTTCTTC
AGATCGTTGAATTCGCGTAGAAAATCCCAAATGCAAAAAGGGTGATTTGG
TGTAGCAGAGGAATTTTAAAGTGAGGCAAAAATGGTGAAGATGACGATGA
TTGCCCGTGTTACTGATGGTCTTCCATTGGCGGAGGGACTGGATGATGGT
CGTGATTTGAGAGATGCTGAGATGTACAAGCAACAAGTCAAGGCCTTGTT
TAAGAATCTCTCGAGAGGCCAGAATGAGGCTTCAAGGATGTCAATTGAGA
CAGGACCTTATGTTTTCCATTATATCATTGAAGGACGTGTTTGTTACTTG
ACAATGTGCGACCGTGCTTATCCCAAAAAGCTGGCCTTTCAATACTTGGA
AGACCTCAAGAACGAATTTGAGCGTGTTAATGGGGCTCAGATTGAAACTG
CTGCCAGGCCTTATGCTTTCATAAAATTTGATACATTCATACAGAAAACA
AAGAAATTGTACCAGGACACACGTACCCAGCGGAATATTGCAAAGTTGAA
TGATGAACTTTATGAGGTCCACCAGATAATGACCCGGAATGTGCAGGAAG
TTCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTGAAATGTCCAGTCGG
TTGACATCAGAGTCGCGCATTTATGCTGATAAGGCAAAAGATTTGATCGA
CAGGCTTTAATTCGGAAATGGGCTCCTGTGGCCATTGNNTGTGGGGTGGT
CTTCATTGTCTTTTGGCTCAAAAAAAGCTATGGTGATTCAGTTGCCCCTA
TGCCGNTCTAATAGTTGCACATTGTGCCTGGGTTCCTCTGCGTCAATGTG
GGGTGCTGGGTGTCCTGGCTCCGTGTCAACACTTCAAAGCATCAGATTTC
ATCGACACTTGTTCTGN
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