EY660204

Overview
NameEY660204
Unique NameEY660204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660204 vs. ExPASy Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.678e-32
Identity = 65/196 (33.16%), Postives = 108/196 (55.10%), Query Frame = 1
Query:  211 GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRGGEVKNSIVGTGDDCISI 798
            GA G+G  D T+A   AW  AC    +  I+   G  FL+  ++ +GPCK  +T+++ G ++A  D   +K  +   W+   RV++L + G G ++G G   WS++        C+  P ++      N +V  + ++NS+  H+    C  ++I ++ V AP +SPNTDGIH+  S G  + N+++G GDDCISI
Sbjct:   47 GASGNGKTDSTKAVQEAWASACGGTGKQTILIPKG-DFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYK--DHGNWIEILRVDNLVITGKGNLDGQGPAVWSKN-SCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISI 238          

HSP 2 Score: 27.335 bits (59), Expect = 5.678e-32
Identity = 12/25 (48.00%), Postives = 13/25 (52.00%), Query Frame = 2
Query:  803 GIFTYRIRNFACGAXHGYSIGSLGK 877
            G     I    CG  HG SIGSLG+
Sbjct:  241 GTSKVNITGVTCGPGHGISIGSLGR 265          
BLAST of EY660204 vs. ExPASy Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.680e-32
Identity = 76/221 (34.39%), Postives = 115/221 (52.04%), Query Frame = 1
Query:  136 LLELPHSGSNRTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRGGEVKNSIVGTGDDCISI 798
            LL L H G ++T      V  +  +GA  +   D +EA  NA+K+AC   + + IV   G TF ++ + + GPCKS L L+I  T+ AP DP     L    WL  N+++  T+ GGG ++G     W   CK   +  C   P  ++F+   N  ++++  ++S+  H+    C  +      V APA SPNTDGIH+S S    + +S   TGDDCIS+
Sbjct:   13 LLFLAHFGESQTG-----VFDITKYGANSNA--DISEALLNAFKEACQSTSPSTIVIPKG-TFTMNQVKLEGPCKSPLELQIQATLKAPSDPSQ---LKVGEWLTVNKLDQFTMSGGGILDGQAAAAWE--CK--QSKKCNKLPNNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRSSSVNITDSNFSTGDDCISV 218          

HSP 2 Score: 25.7942 bits (55), Expect = 5.680e-32
Identity = 10/18 (55.56%), Postives = 11/18 (61.11%), Query Frame = 2
Query:  821 IRNFACGAXHGYSIGSLG 874
            I    CG  HG S+GSLG
Sbjct:  227 ITRVTCGPGHGISVGSLG 244          
BLAST of EY660204 vs. ExPASy Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.633e-31
Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 1
Query:  208 FGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSR-LTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRGGEVKNSIVGTGDDCISI 798
            +GAK DG  D T+AF  AW  AC+    T I+   G   + + +     CK   ++++I+G+IVAP+D  +    + + W++F  V  +++ GG  ++  G   W   CK N  + C     ++ F    N+K+  L  +NSQ+ HI   N   V I  +KV A   SPNTDGIH+ +S    + NS +GTGDDCISI
Sbjct:   38 YGAKPDGSKDSTKAFLAAWDVACASANPTTIIVPKGRFLVGNLVFHGNECKQAPISIRIAGSIVAPEDFRIIA--SSKHWIWFEDVTDVSIYGG-ILDAQGTSLWK--CKNNGGHNCPTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISI 230          

HSP 2 Score: 28.1054 bits (61), Expect = 1.633e-31
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  821 IRNFACGAXHGYSIGSLGKS 880
            I+   CG  HG SIGSLG++
Sbjct:  239 IQTIRCGPGHGISIGSLGRA 258          
BLAST of EY660204 vs. ExPASy Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.288e-30
Identity = 68/206 (33.01%), Postives = 109/206 (52.91%), Query Frame = 1
Query:  190 VIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINT---TNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRGGEVKNSIVGTGDDCISI 798
            V+ +  FG K +  +D  +A  +AW +AC+     KIV  AG T+ ++ I++ GPCK+ + L++ GTI AP DP V KG  +  W  F  ++HLT+ G G  +G G   + ++   +     N          F+   N  V+ +   +S+  H+    C  +      + AP +SPNTDGIH+  S   ++ N+ +GTGDDC+SI
Sbjct:   24 VLDISKFGGKPN--SDIGQALTSAWNEACASTTAAKIVIPAG-TYQLNGIELKGPCKAPIELQVDGTIQAPADPSVIKGTEQ--WFKFLYMDHLTLSGKGVFDGQGATVYKKAAPASAWSGKNSNSKVFMNFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCVSI 224          

HSP 2 Score: 27.335 bits (59), Expect = 2.288e-30
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  821 IRNFACGAXHGYSIGSLGK 877
            ++   CG  HG S+GSLGK
Sbjct:  233 VQGVNCGPGHGLSVGSLGK 251          
BLAST of EY660204 vs. ExPASy Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.048e-30
Identity = 73/216 (33.80%), Postives = 109/216 (50.46%), Query Frame = 1
Query:  157 GSNRTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTI-NGMGQ-EWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRGGEVKNSIVGTGDDCISI 798
            G+  + +K    + V   GAKGD   DD+ AFA AWK+AC+  A + I    G  +++  ++  GPCK  +TL+++G   AP      K      W+ F  +   T+ G   I +G G   W +  C    T  C   P  I F    N K+ ++   NS+  H+   NC  + +S++ + AP ES NTDGIHI  S G  +  + + TGDDC+SI
Sbjct:   58 GAKVSGAKPGAAVDVKASGAKGDSKTDDSAAFAAAWKEACA--AGSTITVPKG-EYMVESLEFKGPCKGPVTLELNGNFKAPATVKTTKP--HAGWIDFENIADFTLNGNKAIFDGQGSLAWKANDCA--KTGKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSI 266          

HSP 2 Score: 28.8758 bits (63), Expect = 5.048e-30
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  821 IRNFACGAXHGYSIGSLGK 877
            + N  CG  HG SIGSLG+
Sbjct:  275 VENVECGPGHGISIGSLGR 293          
BLAST of EY660204 vs. ExPASy Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.117e-29
Identity = 62/188 (32.98%), Postives = 100/188 (53.19%), Query Frame = 1
Query:  235 DDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRGGEVKNSIVGTGDDCISI 798
            D T+A   AWK+AC+  + + I+   G  F +  I + GPCKS + L++ GT+ AP DP   KGL    W+  N+++ LT+ GGG  +G G+  W ++        C+     +  +   N  ++++  ++S+  H+    C  +     K+ A   S NTDGIHI  S G  + N+ + TGDDCIS+
Sbjct:    1 DSTQALTTAWKEACASASPSTILVPKG-NFAVGLITLEGPCKSSIGLQLQGTLKAPADPSKIKGLG---WINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSMNLRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGDDCISL 184          

HSP 2 Score: 29.261 bits (64), Expect = 1.117e-29
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  821 IRNFACGAXHGYSIGSLGK 877
            I N  CG  HG S+GSLG+
Sbjct:  193 ITNITCGPGHGISVGSLGR 211          
BLAST of EY660204 vs. ExPASy Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.487e-28
Identity = 61/197 (30.96%), Postives = 103/197 (52.28%), Query Frame = 1
Query:  208 FGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRGGEVKNSIVGTGDDCISI 798
            F A G   +D T A   A+  AC  PA ++++   G  F +    ++GPCKS +   + G +      D      + RW+ F ++N   + GGGT +G G   W  +   + T  C+  P ++ F    N +++++  ++++  H    +   +   N+K+IAPAESPNTDGIH+    G ++ N+ + TGDDCIS+
Sbjct:   25 FTAGGPPNSDITAAVLKAFTSACQAPAPSQVLIPKG-DFKLGETVMTGPCKSPIEFTLQGNVKT----DGGSTQGKDRWVVFEKINGFKLNGGGTFDGEGNAAWKAN-NCHKTFECKKLPISVRFDFVDNAEIKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCISV 215          

HSP 2 Score: 27.335 bits (59), Expect = 4.487e-28
Identity = 11/25 (44.00%), Postives = 14/25 (56.00%), Query Frame = 2
Query:  803 GIFTYRIRNFACGAXHGYSIGSLGK 877
            G+    I    CG  HG S+GSLG+
Sbjct:  218 GMKNLLIEKVVCGPGHGISVGSLGR 242          
BLAST of EY660204 vs. ExPASy Swiss-Prot
Match: PGLRX_COCCA (Exopolygalacturonase OS=Cochliobolus carbonum GN=PGX1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.020e-13
Identity = 67/249 (26.91%), Postives = 103/249 (41.37%), Query Frame = 1
Query:   97 LSASLVSTEGFDSLLELPHSGSNRTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHP-IDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNH-------LTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLKVIAPAESPN----TDGIHISASRGGEVKNSIVGTGDDCISIXGN 807
            L A  V  + F  +  LP   S+   S++K  +     G K D  N  +        K C+      +VF  G  F I   +D++    + + L I GTI    D D W+  N  + ++ N           + V GGGT++G GQ W+    K    +     P        KN K+ +L+   S Q +    N  +VV SN+ +   ++S N    TDG     S    ++NS +  GDDC+S   N
Sbjct:   25 LGAKAVVAKRFPPVPFLPGKASSVPGSRNKTCMLKALGGGKDDSANILSAV------KQCNNGGH--VVFPKGQQFTIGTALDLT--FLNGIDLDIQGTIQFTNDTDYWQA-NSFKQVFQNATTFFQLGGKDINVYGGGTLDGNGQAWYDLYAK----DIYILRPILFGLIGAKNAKISDLKFRYSPQWYTLVANSSQVVFSNIDIFGDSKSKNPAKNTDGWDTYRSDNIIIQNSNINNGDDCVSFKPN 258          

HSP 2 Score: 27.335 bits (59), Expect = 4.020e-13
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  821 IRNFACGAXHGYSIGSLGK 877
            ++N  C   HG S+GSLG+
Sbjct:  264 VQNLVCNGSHGISVGSLGQ 282          
The following BLAST results are available for this feature:
BLAST of EY660204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
PGLR1_MAIZE5.678e-3233.16Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR_TOBAC5.680e-3234.39Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2... [more]
PGLR6_ARATH1.633e-3135.86Probable polygalacturonase At2g43860 OS=Arabidopsi... [more]
PGLR_MEDSA2.288e-3033.01Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR2_ARATH5.048e-3033.80Exopolygalacturonase clone GBGA483 OS=Arabidopsis ... [more]
PGLR_OENOR1.117e-2932.98Exopolygalacturonase (Fragment) OS=Oenothera organ... [more]
PGLR_BRANA4.487e-2830.96Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
PGLRX_COCCA4.020e-1326.91Exopolygalacturonase OS=Cochliobolus carbonum GN=P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660204 ID=EY660204; Name=EY660204; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGAATTCAGTTAAGAAAGAACATGAAGCAACTTAAGTTTTG
TTCGTTTTCAACATTTTTTATAGTTCTAATCCATGTGCTTGTTTGTCTGT
CAGCAAGCTTGGTTTCTACAGAAGGCTTTGACTCGTTGTTGGAGCTCCCA
CATTCTGGGTCAAACAGAACTCGATCCAAATCCAAAAGGGTAATTTTTGT
TGGTGATTTTGGTGCCAAAGGAGATGGCTTCAATGATGACACTGAGGCAT
TTGCAAATGCTTGGAAGAAGGCTTGTTCTTTTCCTGCACGAACAAAAATT
GTTTTTTCAGCTGGATACACTTTTCTAATCCATCCCATCGATATTTCTGG
GCCCTGTAAATCTAGACTTACTTTGAAGATATCTGGAACAATAGTTGCTC
CTAAAGATCCTGATGTCTGGAAGGGTTTGAATCGACGTAGATGGCTCTAC
TTTAATCGGGTGAACCATCTTACTGTACAAGGAGGAGGGACAATCAATGG
AATGGGACAGGAATGGTGGTCAAGATCCTGCAAGATTAACACAACAAATC
CATGTCGACATGCTCCAACGGCTATTACTTTTCATAAGTGCAAGAATTTG
AAAGTCCAGAACCTTAGGGTGGTCAACAGTCAACAAATGCACATTGCATT
CACTAATTGTCTACGGGTTGTGATATCCAATCTCAAGGTGATTGCACCTG
CTGAAAGTCCTAATACGGATGGGATACACATCAGTGCATCTCGTGGTGGT
GAAGTCAAGAATAGCATAGTTGGAACAGGAGATGACTGCATATCTATAGN
TGGGAATCTTCACNTATCGAATCAGAAACTTTGCCTGTGGGGCANGNCAT
GGGTATAGCATTGGAAGCTTGGGGAAATCAATTCATCTGTA
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