EY660202

Overview
NameEY660202
Unique NameEY660202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660202_ssr32 microsatellite EY660202_ssr32:32..45. BLAST: Citrus ESTs to Prunus persica proteins V1
EY660202_ssr689 microsatellite EY660202_ssr689:689..703. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10604 contig Csv1_Contig10604:15..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.982e-26
Identity = 76/190 (40.00%), Postives = 102/190 (53.68%), Query Frame = 3
Query:  276 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAAASSDITAKAT-LQLSRASSIVMLIGYIAYLVF 842
            L +I+ VI  +KL++L P  P +II          VF  S+LG+TPLAER+ + TEQ+A YTGPTVGGLLNAT GNATE+IIAI+AL    I VV+                   F GGI +  K+Q + +  A VNS                 +    S++   A+ + LSR SS +ML+ Y +YL F
Sbjct:   41 LRSIRIVIFTSKLNLLLPFGPASIILHYTTSRHGLVFLFSMLGITPLAERLGYATEQLAIYTGPTVGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFFAGGIVHRNKDQVFSKATAVVNSGLLLMAVMGLMFPAVLHF--THSEVRQGASEVSLSRFSSCIMLVAYASYLYF 228          
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: CAX4_ORYSJ (Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.045e-17
Identity = 66/183 (36.07%), Postives = 87/183 (47.54%), Query Frame = 3
Query:  294 VILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAAASSDITAKATLQLSRASSIVMLIGYIAYLVF 842
            V L +KL+VL P   LAI          WVF LS+LG+ PLAER+ F T+   +     VG LLN+  GNATELII+I AL   K+ VV+                   F GG+A  +  Q + +  A VNS                 Y  + +    K+ L LSR SS +ML+ Y +YL F
Sbjct:   67 VFLKSKLNVLIPCGFLAIFLNYMTQRYGWVFPLSMLGIIPLAERLGFATD---WQISCEVGRLLNSAFGNATELIISIHALSRGKLHVVQQCLLGSILSNLLLVLGSAFFSGGLACGKTMQTFSKADAVVNSGLLLMAVMGLLIPAALHYTHSEAQF-GKSELALSRFSSCIMLVAYASYLYF 245          
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: VCX1_SCHPO (Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe GN=vcx1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.039e-13
Identity = 49/185 (26.49%), Postives = 88/185 (47.57%), Query Frame = 3
Query:  288 QEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAAASSDITAKATLQLSRASSIVMLIGYIAYLVF 842
            + V++ +  +++   +P+ +I   F +    VF L++L + PLA  +SF TEQ++  +GPT+G LLNA+ GNA ELI+ + AL   ++ +V+                      GI   R+   ++   A                   F Y+   +  +  A L +SR +++++LI Y+  LVF
Sbjct:   54 KSVLMSSYFNLMLVFVPIGLIAGWFEWNAKSVFILNMLAIIPLASLLSFATEQLSIISGPTLGALLNASFGNAIELIVGVLALKRGELRIVQSSLLGSILSNLLLVFGMCLVTTGIR--REITTFNITVAQTMIAMLALSTATILIPATFHYSLPDNANSENALLHVSRGTAVIVLIVYVLLLVF 236          
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: YFKE_BACSU (Putative cation exchanger yfkE OS=Bacillus subtilis GN=yfkE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 52/180 (28.89%), Postives = 80/180 (44.44%), Query Frame = 3
Query:  333 IPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAAASSDITAKAT-LQLSRASSIVMLIGYIAYLVFH-CGHTGIF 866
            +PL++IG    +    +FA+  + +  LA  +   TE ++   GP +GGLLNAT GNA ELII++FAL E    +V                    F GG+       KY R++ +++                F      S     A+ L LS   SI+M++ Y+A L F    H G++
Sbjct:   13 VPLSVIGSLMHWPSAVLFAVYCVTIIALASYMGRATESLSIIAGPRIGGLLNATFGNAVELIISLFALKEGLTGIVLASLTGSVLGNLLLVAGLSFFVGGL-------KYKRQEFNIHDARHNSGLLIFAIIVAFVIPEVFSVGMGNASKLNLSIGISIIMILLYVAALYFKLVTHRGVY 185          
The following BLAST results are available for this feature:
BLAST of EY660202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CAX3_ORYSJ7.982e-2640.00Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
CAX4_ORYSJ1.045e-1736.07Putative vacuolar cation/proton exchanger 4 OS=Ory... [more]
VCX1_SCHPO2.039e-1326.49Vacuolar calcium ion transporter OS=Schizosaccharo... [more]
YFKE_BACSU3.256e-1128.89Putative cation exchanger yfkE OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-F06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660202 ID=EY660202; Name=EY660202; organism=Citrus sinensis; type=EST; length=884bp
ATTTTCTCTCTCATCAATCTTTAATCAAAAAATATATATATATATTTTTT
ATTATTAATTGTTTCTATCCTTCGTGTTTTTTTTTTTCTTTCAATTGCAT
TTGTGAAAAAATGGCTTCGACTGAACCATGGCTGATGGAGAATGGCAGCG
TGAAGGTTTTGAGCAAGGAGATCAGACATGGAAGAACTGCACACAACATG
TCATCCTCCTCGTTGAGGAAAAAATCCGATCTTACCCTTGTCTCGAAAAT
TCGATTCCCTTGTCTTAGACGGTGTCTGGCTAATATCCAGGAGGTCATTT
TGGGGACTAAACTTTCAGTTCTCTTTCCCGCCATTCCTTTAGCCATAATC
GGCCAGTGTTTTGGATTTGCAGAACCATGGGTATTCGCTCTGAGCTTACT
AGGACTGACTCCTCTGGCTGAACGTGTCAGCTTCTTGACAGAGCAAATTG
CTTTCTACACTGGCCCAACAGTGGGGGGATTATTGAACGCGACATGCGGC
AATGCCACGGAGCTCATCATAGCAATTTTTGCCCTATACGAACGTAAAAT
TGACGTGGTCAAATATTCTCTTTTGGGTTCCATTCTCTCAAACCTTCTTC
TGGTTCTTGGCACTTCGCTCTTCTGTGGAGGGATTGCCAATCTCAGAAAG
GAACAAAAATACGATAGAAAACAAGCCGATGTCAACTCGCTGCTGCTGCT
GCTGGCATTGCTGTGCCACATGTTACCATTGCTATTCNAATACGCTGCGG
CCTCCTCTGATATTACTGCCAAGGCGACCCTTCAGCTATCAAGAGCCAGC
AGCATTGTAATGCTGATTGGGTACATCGCCTATCTCGTCTTCCATTGTGG
ACACACGGGAATTTTTTGAAGCTCANGAGATTCG
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