EY660171

Overview
NameEY660171
Unique NameEY660171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7606 contig Csv1_Contig7606:101..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660171 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCR (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus GN=lldD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.499e-19
Identity = 54/173 (31.21%), Postives = 88/173 (50.87%), Query Frame = 2
Query:  152 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 670
            +++  ++   A+ +LP+ +FDY   GA  + T+  N +  + I  R R+L+DVS +D +TT+ G + ++P+ +AP  +  M    GE          G    LS+ S   V+EV +      +FQLYV +DR  +  L+ RA  AG   +  TVD P  G R  D  +  + P
Sbjct:    3 VSSTTDFREAARRRLPRFLFDYIDGGAYAERTMARNIDDLADIALRQRVLMDVSVVDPSTTLFGVRQALPVALAPVGLTGMYARRGECQAARAAAAKGVPFCLSTVSVCDVDEVRAASATPFWFQLYVLRDRGFMRDLLARASAAGATTLVFTVDMPVPGARYRDAHSGMSGP 175          
BLAST of EY660171 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCN (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.499e-19
Identity = 54/173 (31.21%), Postives = 88/173 (50.87%), Query Frame = 2
Query:  152 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 670
            +++  ++   A+ +LP+ +FDY   GA  + T+  N +  + I  R R+L+DVS +D +TT+ G + ++P+ +AP  +  M    GE          G    LS+ S   V+EV +      +FQLYV +DR  +  L+ RA  AG   +  TVD P  G R  D  +  + P
Sbjct:    3 VSSTTDFREAARRRLPRFLFDYIDGGAYAERTMARNIDDLADIALRQRVLMDVSVVDPSTTLFGVRQALPVALAPVGLTGMYARRGECQAARAAAAKGVPFCLSTVSVCDVDEVRAASATPFWFQLYVLRDRGFMRDLLARASAAGATTLVFTVDMPVPGARYRDAHSGMSGP 175          
BLAST of EY660171 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPG (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain GB-1) GN=lldD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.958e-19
Identity = 68/213 (31.92%), Postives = 99/213 (46.48%), Query Frame = 2
Query:  167 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD--------------IKNRFTLPPFLTLKNFQGL--DLGKM--XRGNDSGLAAY 751
            +Y A A+ KLP  +F Y   GA  + TL+ N +  + I  R R+L ++S++ ++T +    +SMP+ +AP  +  M    GE          G   T+S+ S   +EEVA       +FQLYV KDR  +   + RA+ AG K +  TVD P  G R  D              +    T P +       G   DLG +   RGN +GLA Y
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLASIALRQRVLNNMSELSLSTRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGKNGPLRRVLQAMTHPEWAWDVGVMGRPHDLGNISKYRGNPTGLADY 220          
BLAST of EY660171 vs. ExPASy Swiss-Prot
Match: LLDD_XANC5 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=lldD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.557e-19
Identity = 63/208 (30.29%), Postives = 101/208 (48.56%), Query Frame = 2
Query:  152 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMXRGNDSG-LAAY 751
            I+   +Y A A+ +LP  +F Y   GA  + TL+ N +  + +  R R+L ++S + ++T + G  ++MP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLYV KDR  +   + RA+ AG   +  TVD P  G R  D  +  + P     +  Q +       D+G + R +D G ++AY
Sbjct:    3 ISAASDYRAAAQARLPPFLFHYIDGGAYAEHTLRRNVSDLADVALRQRVLRNMSDLRLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGLLGRPHDLGNISAY 210          
BLAST of EY660171 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP7 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=lldD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.557e-19
Identity = 66/208 (31.73%), Postives = 99/208 (47.60%), Query Frame = 2
Query:  152 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMXRGNDSG-LAAY 751
            I+   +Y A A+  LP  +F Y   GA  + TL+ N    S +  R RIL ++S + + TT+   K++MP  +AP  +  M    GE          G   TLS+ S   +EEVA T     +FQLYV +DR  +   + RA+ AG   +  TVD P  G R  D  +  + P     + +Q +       D+G   R +D G ++AY
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYIDGGAYAEHTLRRNVEDLSDVALRQRILRNMSDLSLETTLFNEKLAMPTALAPVGLCGMYARRGEVQAAGAADDKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAALRRYWQAVTHPQWAWDVGLNGRPHDLGNISAY 210          
BLAST of EY660171 vs. ExPASy Swiss-Prot
Match: LLDD_CAUSK (L-lactate dehydrogenase [cytochrome] OS=Caulobacter sp. (strain K31) GN=lldD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.557e-19
Identity = 63/211 (29.86%), Postives = 99/211 (46.92%), Query Frame = 2
Query:  152 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMXRGNDSGLAAYXAGQ 763
            I++  ++   A+ +LP+ +FDY   GA  + TL  N +  + I  R R+L DVS++   TT+ G + ++P+ +AP  +  M    GE          G    LS+ S   + EV+       +FQLY+ +DR  +  L+ RA  AG  A+  TVD P  G R  D  +  T P     +  Q +       D+G M R +  G  A   G+
Sbjct:    3 ISSTTDFREAARRQLPRFLFDYIDGGAYAERTLARNVSDLADISLRQRVLKDVSRVSTRTTLFGVEQTLPVALAPVGLTGMYARRGEVQAARAAAAKGVPFCLSTVSVCDLAEVSRASSAPIWFQLYMLRDRGFMRDLLARAADAGATALVFTVDMPVPGARYRDAHSGMTGPNAAMRRLVQAVFKPGWAWDVGVMGRPHTLGNVAPVLGE 213          
BLAST of EY660171 vs. ExPASy Swiss-Prot
Match: LLDD_ACIAD (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter sp. (strain ADP1) GN=lldD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.557e-19
Identity = 60/203 (29.56%), Postives = 95/203 (46.80%), Query Frame = 2
Query:  152 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMXRGNDSG 739
            I++  +Y   AK +LP  +F Y   GA  ++TL+ N    S+I  R R+L D+S + + T +    +SMP+ ++P  +  M    GE          G   T+S+ S   +EEV        +FQLYV +DR  +   + RA+ AG   +  TVD P  G R  D  +  + P     +  Q +       D+G + R +D G
Sbjct:    3 ISSSNDYREAAKRRLPPFLFHYIDGGAYAEYTLKRNVEDLSQIALRQRVLNDMSSLSLETKLFNETLSMPVALSPVGLTGMYARRGEVQAAVAADKKGIPFTMSTVSVCPIEEVTPAIKRPMWFQLYVLRDRGFMKNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQSMMHPQWAWDVGLLGRPHDLG 205          
BLAST of EY660171 vs. ExPASy Swiss-Prot
Match: LLDD_XANCP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris GN=lldD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.339e-19
Identity = 61/203 (30.05%), Postives = 97/203 (47.78%), Query Frame = 2
Query:  152 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMXRGNDSG 739
            I+   +Y A A+ +LP  +F Y   GA  + TL+ N +  + I  R R+L ++S + ++T + G  ++MP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLYV KDR  +   + RA+ AG   +  TVD P  G R  D  +  + P     +  Q +       D+G + + +D G
Sbjct:    3 ISAASDYRAAAEARLPPFLFHYIDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKTAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAMTHPRWAWDVGLLGKPHDLG 205          
BLAST of EY660171 vs. ExPASy Swiss-Prot
Match: LLDD_XANC8 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lldD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.339e-19
Identity = 61/203 (30.05%), Postives = 97/203 (47.78%), Query Frame = 2
Query:  152 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMXRGNDSG 739
            I+   +Y A A+ +LP  +F Y   GA  + TL+ N +  + I  R R+L ++S + ++T + G  ++MP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLYV KDR  +   + RA+ AG   +  TVD P  G R  D  +  + P     +  Q +       D+G + + +D G
Sbjct:    3 ISAASDYRAAAEARLPPFLFHYIDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKTAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAMTHPRWAWDVGLLGKPHDLG 205          
BLAST of EY660171 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPW (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain W619) GN=lldD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.339e-19
Identity = 68/213 (31.92%), Postives = 98/213 (46.01%), Query Frame = 2
Query:  167 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD--------------IKNRFTLPPFLTLKNFQGL--DLGKM--XRGNDSGLAAY 751
            +Y A A+ KLP  +F Y   GA  + TL+ N +  + I  R R+L ++S++ + T +    +SMP+ +AP  +  M    GE          G   T+S+ S   +EEVA       +FQLYV KDR  +   + RA+ AG K +  TVD P  G R  D              +    T P +       G   DLG +   RGN +GLA Y
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLAGIALRQRVLKNMSELSLETRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGANGPMRRVLQAMTHPEWAWDVGVMGRPHDLGNISKYRGNPTGLADY 220          
The following BLAST results are available for this feature:
BLAST of EY660171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_CAUCR1.499e-1931.21L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_CAUCN1.499e-1931.21L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_PSEPG1.958e-1931.92L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_XANC52.557e-1930.29L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_KLEP72.557e-1931.73L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_CAUSK2.557e-1929.86L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_ACIAD2.557e-1929.56L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_XANCP3.339e-1930.05L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANC83.339e-1930.05L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_PSEPW3.339e-1931.92L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660171 ID=EY660171; Name=EY660171; organism=Citrus sinensis; type=EST; length=898bp
CCACGCGTCCGCTTAAATCTCCCTCTATAACTCAGTCTTTGTTCATCATC
GTCTTCTCTCTACTGGTTTCTCTGAATGCACTTTGCTGCACTGTCTTTGT
AAACCTTAGATTAATTTAAGTAGAAAACAGTCAACTGACAAGATGGGAGA
GATCACAAATGTGATGGAGTATGAGGCCATTGCCAAGGAAAAGTTGCCAA
AGATGGTGTTTGATTACTATGCTTCAGGTGCAGAGGACCAGTGGACTTTG
CAAGAGAACAGGAATGCTTTCTCAAGAATCCTGTTTCGACCTCGCATTCT
GATTGATGTAAGCAAAATAGACATGAATACCACTGTCTTGGGCTTCAAGA
TATCGATGCCAATCATGATTGCCCCAACAGCCATGCAGAAGATGGCTCAT
CCTGAAGGGGAGTATGCTACAGCTAGAGCTGCATCGGCTGCTGGAACGAT
TATGACATTGTCTTCGTGGTCTACTTCTAGCGTTGAAGAGGTTGCTTCAA
CAGGACCTGGCATCCGCTTTTTCCAGCTCTATGTGTACAAGGACAGGAAT
GTGGTTGCTCAGCTTGTGAGAAGGGCTGAAAGAGCCGGATTCAAGGCCAT
TGCTCTAACAGTTGATACCCCGAGGCTGGGTCGCAGAGAAGCTGACATCA
AGAACAGATTCACTCTACCACCATTTTTGACATTAAAGAATTTTCAGGGT
TTGGACCTTGGCAAGATGGNACGAGGCAATGACTCTGGGCTTGCTGCCTA
TGNTGCTGGTCAATTGATCGTTCTCTGACCTGGAAGACGTGAAGTGGCTT
CAACAATCACCAATTNGCCAATCTGGTGAGGGTGTACTCCAGCAAAGATG
CGCGGATTGCATTCAGCTGAACAGCTGGGATTATGTATCCATCATGGA
back to top