EY660170

Overview
NameEY660170
Unique NameEY660170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3406 contig Csv1_Contig3406:1068..1954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660170 vs. ExPASy Swiss-Prot
Match: PEL16_ARATH (Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.046e-21
Identity = 54/127 (42.52%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   12 LIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKS-SSMVGSITSGAGALTCRKSRQC 389
            L++RMPR R GY HV NN Y  W MYAIGGSA+PTI S+GN + A   + +KEVTKR       W  W WR+  D+  NGAYF P                  +  ++V S+T+ AG L C ++  C
Sbjct:  269 LVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIASDKSNSKEVTKR--EVKGGWNNWRWRTSKDVFKNGAYFVPSGYGSISLPYSSAQRFTVAPGNLVPSLTADAGPLNCNRNGPC 393          
BLAST of EY660170 vs. ExPASy Swiss-Prot
Match: MPA13_AMBAR (Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.672e-21
Identity = 54/125 (43.20%), Postives = 65/125 (52.00%), Query Frame = 3
Query:   18 QRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 389
            QRMPRCR G+F VVNN+Y  W  YAIGGS+ PTI  QGNR+ AP +   K V  R  T A++   WNWRS+ DLL NGA F T                  +       +TS AG  +C     C
Sbjct:  273 QRMPRCRFGFFQVVNNNYDRWGTYAIGGSSAPTILCQGNRFLAPDDQIKKNVLARTGTGAAESMAWNWRSDKDLLENGAIFVTSGSDPVLTPVQSAGMIPAEPGEAAIKLTSSAGVFSCHPGAPC 397          
BLAST of EY660170 vs. ExPASy Swiss-Prot
Match: MPAC1_CHAOB (Major pollen allergen Cha o 1 OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.015e-20
Identity = 55/127 (43.31%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   18 QRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQCS 392
            QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP ++  KEVT+RV   + S    W WRS  D   NGAYF +                  ++ S    +T  AG LTC  S+ CS
Sbjct:  249 QRMPRARYGLIHVANNNYDPWSIYAIGGSSNPTILSEGNSFTAPNDSDKKEVTRRVGCESPSTCANWVWRSTQDSFNNGAYFVSSGKNEGTNIYNNNEAFKVENGSAAPQLTKNAGVLTCILSKPCS 375          
BLAST of EY660170 vs. ExPASy Swiss-Prot
Match: SBP_CRYJA (Sugi basic protein OS=Cryptomeria japonica PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.858e-20
Identity = 50/126 (39.68%), Postives = 70/126 (55.56%), Query Frame = 3
Query:   18 QRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 389
            QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ K+VT R+    +S    W W+S  D+  NGAYF +                  ++ +    +T  AG LTC  S++C
Sbjct:  249 QRMPRARYGLVHVANNNYDPWTIYAIGGSSNPTILSEGNSFTAPNESYKKQVTIRIGCKTSSSCSNWVWQSTQDVFYNGAYFVSSGKYEGGNIYTKKEAFNVENGNATPQLTKNAGVLTCSLSKRC 374          
BLAST of EY660170 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNAS (Major pollen allergen Jun a 1 OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.123e-19
Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 3
Query:   18 QRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF 260
            QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ KEVTKR+   + S    W WRS  D  +NGAYF
Sbjct:  249 QRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYF 330          
BLAST of EY660170 vs. ExPASy Swiss-Prot
Match: MPAC1_CUPAR (Major pollen allergen Cup a 1 OS=Cupressus arizonica PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.915e-19
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 3
Query:   18 QRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF 260
            QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ KEVTKR+     S    W WRS  D   NGAYF
Sbjct:  228 QRMPRARYGLVHVANNNYDQWNIYAIGGSSNPTILSEGNSFTAPNESYKKEVTKRIGCETTSACANWVWRSTRDAFTNGAYF 309          
BLAST of EY660170 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNVI (Major pollen allergen Jun v 1 OS=Juniperus virginiana PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 3
Query:   18 QRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF 260
            QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP   + KEVTKR+   + S    W WRS  D   NGAYF
Sbjct:  249 QRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPNENYKKEVTKRIGCESTSACANWVWRSTRDAFSNGAYF 330          
BLAST of EY660170 vs. ExPASy Swiss-Prot
Match: MPA14_AMBAR (Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.372e-17
Identity = 53/126 (42.06%), Postives = 66/126 (52.38%), Query Frame = 3
Query:   18 QRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRV-DTAASQWKGWNWRSEGDLLLNGAYFTP-XXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 389
            QRMP  RHG+  VVNN+Y  W  YA+GGSA PTI SQGNR+ A  +   KEV  R  ++A S+   WNWRS  D+  NGA F P                  +    V  +TS AG L+C+    C
Sbjct:  269 QRMPNLRHGFVQVVNNNYERWGSYALGGSAGPTILSQGNRFLA--SDIKKEVVGRYGESAMSESINWNWRSYMDVFENGAIFVPSGVDPVLTPEQNAGMIPAEPGEAVLRLTSSAGVLSCQPGAPC 392          
The following BLAST results are available for this feature:
BLAST of EY660170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL16_ARATH2.046e-2142.52Probable pectate lyase 16 OS=Arabidopsis thaliana ... [more]
MPA13_AMBAR2.672e-2143.20Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifol... [more]
MPAC1_CHAOB1.015e-2043.31Major pollen allergen Cha o 1 OS=Chamaecyparis obt... [more]
SBP_CRYJA3.858e-2039.68Sugi basic protein OS=Cryptomeria japonica PE=1 SV... [more]
MPAJ1_JUNAS1.123e-1954.88Major pollen allergen Jun a 1 OS=Juniperus ashei P... [more]
MPAC1_CUPAR1.915e-1954.88Major pollen allergen Cup a 1 OS=Cupressus arizoni... [more]
MPAJ1_JUNVI7.277e-1954.88Major pollen allergen Jun v 1 OS=Juniperus virgini... [more]
MPA14_AMBAR1.372e-1742.06Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifol... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660170 ID=EY660170; Name=EY660170; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGCTCATTCAGAGAATGCCAAGGTGTAGACATGGTTATTTC
CATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGG
AAGTGCAAACCCCACCATCAACAGCCAGGGAAACAGATACAATGCTCCAT
TGAATGCCTTCGCAAAGGAGGTAACAAAGAGGGTGGACACAGCTGCAAGC
CAGTGGAAGGGCTGGAACTGGAGATCTGAAGGAGACCTCTTGCTGAACGG
TGCCTACTTTACCCCATCCGGAGCAGGAGCCTCAGCTAGCTATGCTCGTG
CTTCAAGCTTGGGAGCCAAGTCTTCCTCCATGGTTGGATCCATTACTTCT
GGTGCTGGTGCTCTTACTTGCCGCAAGAGCCGTCAGTGCTCATAGTATTC
ATCATTAAATTGGCCGAAAAAAGAAATGGCCATCGAATTTCTGTTTTGTT
TTTCATTTTTCTTCTATATAGTATATCACCTATCCAATTTATCCACAATC
TGGTCATTGTTTCAATCTCTACCGTATATCTGCTTCACATATTTTGACAA
GTGTACATTATTGCACATGTCATTGTATTGCCTCACCCAGTTTGTTTATC
AGTTACTTGCTCAACCTCGGCCTGCTTCAACTGAAAAAACAAACATTTGC
ATTCCCAGAAGCAGGTGCGGAAGTGTTGTTCATTTTATTTTCCCTCTTTG
GCCTCTTTTTTCAGCCTCAATTCTCATTTCCTTCTAACTAGCACTTGCCT
ATTTGTGTCCAGTGTCAGTCAGCTGTCAACTGTCAATCTTGGTCTCTCTA
CATACTCTCCTTTTCATTTTTGGCTTTTGGGGTTATAAGGGTCGGAATGA
TTTTGTGCTTTTTTCTCCCCGCTCCCTTTGTGAGCTAA
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