EY660164

Overview
NameEY660164
Unique NameEY660164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660164 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.172e-38
Identity = 87/213 (40.85%), Postives = 118/213 (55.40%), Query Frame = 1
Query:   13 IKLVPGDSAGTVTAFYMNSNT--ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGD--REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQA-LTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECL 630
            IKL    SAG V AFY+++    E   DE+DFEFLGN  G+ + +QTNIY NG     RE+R NLWFDP  D+H Y+ILW+  HI+FYVD+VPIR  K +      FP  +PM +YST+W+   WAT GG   +++  AP+ + + D  + GC V       S      +     + +T  +  +    R  HM Y YC D  RY V   EC+
Sbjct:   80 IKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECV 291          
BLAST of EY660164 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.234e-34
Identity = 82/209 (39.23%), Postives = 115/209 (55.02%), Query Frame = 1
Query:    7 VRIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP--GPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 627
            VRIK     S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +    +P  Q M +  ++         G +  ID  + P+ A ++   IEGC     G   C ++P  WW   N + L++ E   Y   R  ++ YDYC+D+ RYP  P EC
Sbjct:   70 VRIKAPQTTSTGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSV-------QNGSI--IDPKQMPYIAKFQASKIEGCKTEFMGIDKC-TDPKFWW---NRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQEC 263          
BLAST of EY660164 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 51/166 (30.72%), Postives = 73/166 (43.98%), Query Frame = 1
Query:   13 IKLVPGDSAGTVTAF--YMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWE---ADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGN 495
            +++    + G V++F  Y   +  N  DE+D EFLG  T +   VQ N Y NG G  E   NL FD + D+H Y   W   +I FYVD    +VY+ +   P     P  +   LW     D+W  R        ++  +  YY +   +  P P P    S P N
Sbjct:  108 VRMKAAKNVGIVSSFFTYTGPSDNNPWDEIDIEFLGKDTTK---VQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGK--KVYRGTRNIPV---TPGKIMMNLWPGIGVDEWLGRYDGRTPLQAEYEYVKYYPNGVPQDNPTPTPTIAPSTPTN 265          
The following BLAST results are available for this feature:
BLAST of EY660164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH28_ARATH4.172e-3840.85Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH6.234e-3439.23Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_CLOTH2.549e-1130.72Beta-glucanase OS=Clostridium thermocellum (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-C03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660164 ID=EY660164; Name=EY660164; organism=Citrus sinensis; type=EST; length=896bp
CCACGCGTCCGGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCAC
TGCATTTTATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGATT
TTGAGTTCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAAT
ATCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGTT
TGACCCTGCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCACC
ATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAAACAGT
GGAAGGGCTCCATTTCCAATGAACCAACCCATGGGGGTGTATTCGACGCT
GTGGGAAGCAGATGACTGGGCAACAAGAGGTGGTCTAGAGAAAATAGATT
GGAGCAAAGCTCCTTTTTATGCTTATTACAGAGACTTTGATATTGAGGGC
TGCCCAGTTCCTGGACCAGCAAACTGTGCCTCGAACCCAGGTAACTGGTG
GGAGGCAAATAATTATCAAGCCCTCACCGCCATGGAAGCAAGAAGATACA
GATGGGTTCGTCTCAACCACATGATCTATGATTATTGCACTGATAAATCA
AGATACCCAGTACCCCCACCGGAATGCCTTGCCGGCATATAAATTCAACC
TGCCAATTAATTAAGCAGTTGGACGGTACTCCATATCCGTATCATATCAT
GTATATTACTTCACGTACACGTCCTTTGTATTATTCCCTATTCGTGTGAA
AAGACTTATACGCATATCAGGGGAGGGGCAGGAGGGGAAATAAACATCGT
GGGCTCTTAATGTGGATATGGGAGTGGGAATATGTGGGTATTCTGCTTCG
CTTGTACATATATAAGTCTGAATTTGATGCACAGGATCTGTAGCCA
back to top