EY660153

Overview
NameEY660153
Unique NameEY660153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660153 vs. ExPASy Swiss-Prot
Match: UCRIC_ANASP (Cytochrome b6-f complex iron-sulfur subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=petC3 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.749e-37
Identity = 80/176 (45.45%), Postives = 102/176 (57.95%), Query Frame = 2
Query:  158 SIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFF-APPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 682
            SIP +  P + +RQL+N +    V++  G  L P   F  AP     AGG   AKD +G  I A+  L    P  R L  GL G+PTYL+V++D TL   G+   CTHLGC  PWN  + +F CPCHGS+Y   G VVRGPAPL L +    V +  ++  PWTETD RTG+ PWW
Sbjct:    4 SIPIES-PSLSRRQLLNFITGATVAVTAGAALYPAGKFLIAPAEKTGAGGAILAKDILGKQIPASQIL-AEPPQTRALVAGLAGEPTYLIVKEDHTLDRIGLVDNCTHLGCTFPWNPLDQQFQCPCHGSRYAPDGSVVRGPAPLPLKIVQVAVIDNSILISPWTETDPRTGKKPWW 177          
BLAST of EY660153 vs. ExPASy Swiss-Prot
Match: UCRIB_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.155e-35
Identity = 78/169 (46.15%), Postives = 94/169 (55.62%), Query Frame = 2
Query:  179 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 682
            P M +RQL+N      V+      + P   FF PP   + A GG  AKD IG+ I A+  L     G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ QG V RGPA   L L H  V++  +    W ETD RTGE PWW
Sbjct:   10 PSMSRRQLLNFFTGAIVAATASAAIYPATKFFMPPAESTDAEGGVLAKDKIGHPIPASQIL-VQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVHVQVKDDYIWISSWQETDPRTGEKPWW 177          
BLAST of EY660153 vs. ExPASy Swiss-Prot
Match: UCRIB_ANASP (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena sp. (strain PCC 7120) GN=petC2 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.389e-35
Identity = 77/169 (45.56%), Postives = 94/169 (55.62%), Query Frame = 2
Query:  179 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 682
            P M +RQL+N      V+      + P   FF PP   + A GG  A+D IG+ I A+  L     G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ QG V RGPA   L L    V++  +   PW ETD RTGE PWW
Sbjct:   10 PSMSRRQLLNFFTGAIVATTASAAIYPATKFFMPPAESTDAEGGILAQDKIGHPIPASQIL-AQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVQVQVKDDYIWISPWQETDPRTGEKPWW 177          
BLAST of EY660153 vs. ExPASy Swiss-Prot
Match: UCRI_CHLTE (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium tepidum GN=petC PE=3 SV=4)

HSP 1 Score: 73.559 bits (179), Expect = 1.794e-12
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  407 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVV 631
            D   +VV    +L +  ++A+CTHLGC+V W+ A +   CPCHG++Y   G+++ GP PL L      +E+GK+V
Sbjct:  105 DDKVIVVNHGGSLTA--VSAICTHLGCLVHWDEAADMIACPCHGAKYTQDGKIISGPQPLPLKQYKVKIEDGKIV 177          
BLAST of EY660153 vs. ExPASy Swiss-Prot
Match: UCRI_CHLLT (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium limicola f.sp. thiosulfatophilum GN=petC PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.997e-12
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  419 LVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVV 631
            +VV K   L +  ++AVCTHLGC+V W  A+N++ CPCHG++Y   G ++ GP PL L    A +E   ++
Sbjct:  109 IVVNKGGALTA--VSAVCTHLGCLVNWVDADNQYFCPCHGAKYKLTGEIISGPQPLPLKQYKARIEGDSII 177          
The following BLAST results are available for this feature:
BLAST of EY660153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIC_ANASP2.749e-3745.45Cytochrome b6-f complex iron-sulfur subunit 3 OS=A... [more]
UCRIB_ANAVT1.155e-3546.15Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRIB_ANASP4.389e-3545.56Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRI_CHLTE1.794e-1240.00Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]
UCRI_CHLLT3.997e-1242.25Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660153 ID=EY660153; Name=EY660153; organism=Citrus sinensis; type=EST; length=905bp
CCACGCGTCCGCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGCTCAA
GCAAGGGTGGTATGTTCTGTCCATCAAGAGCTTTTCTTGTGAAACCAGCA
AGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCCA
GGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGGCAGC
TCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATTTATG
TTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTGCTGG
TGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCTG
ATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATTG
AAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATC
ATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGA
ATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAAT
AACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGC
TCATGCCAACGTTGAAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAAA
CAGATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGGT
GCCTGTGCTTTCAATAATCAAGTTTTTGGCCGGCCGGTTGCTTTTGCGTA
CTGCATAACATACTGAAACGAACATGCTTTATCAGAATGGAGCTCCCACA
TGTAAAGCTACTTTGGCTGAATCTGCTATCTTGCAATCTTTGGAATCTGA
AAATTTTCCTTATCACTCATTCTTGGATCCTAAAAATCTACCCTCAACAA
TGGAT
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