EY660140

Overview
NameEY660140
Unique NameEY660140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.648e-12
Identity = 35/103 (33.98%), Postives = 51/103 (49.51%), Query Frame = 2 
Query:  365 ETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISF 673
            ET S+LP  + + +  +I Y++  GW P LE            H +P      YW MWKLPM+G  D   VL E+ + +  YP+   R+I +D   Q Q  +F
Sbjct:   15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105
The following BLAST results are available for this feature:
BLAST of EY660140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
RBS2_HYDMR5.648e-1233.98Ribulose bisphosphate carboxylase small chain 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660140 ID=EY660140; Name=EY660140; organism=Citrus sinensis; type=EST; length=957bp
CCACGCGTCCGTGCAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCT
CAATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCT
CAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTT
CCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACG
GCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCCTCAAGTCT
TCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCAT
TGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTG
GCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAA
GCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTG
CTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGCT
CACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATG
TATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTTGGGAGGTCCA
GAAAGGATACCCACATTCATTTCGTCGAATTATCNGATTTGACAAACAGC
GTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCCAAGCACCAGGCGTCTAG
GTTCCCAAATTAATTTTGTGTACCACCCATGCAATANTGGTGATTATTAT
TATGGGGAACCCCCATAATGATCATTCAATCAATGGGGGGTCCGGTTTGC
GGTTAATTTGGAACTTAGCTGCTGGTGCTGCTGGCCCAACCTTTTTGGGT
TTCCCCCCGAATTTTGGCTTTTTTTGTTAAATAAATTTTAAAAAATGGAA
CCCTTGTGTTTAAGTTCCCTAAAANNNGNNNNNGNNTGGANATAGAAATA
AAGATAA
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