EY660140

Overview
NameEY660140
Unique NameEY660140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.750e-65
Identity = 131/217 (60.37%), Postives = 144/217 (66.36%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691
            MASSMISS  V T NRA    A MVAPFTG                                     LKS +  P T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYREH+ S GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F RII FD  RQVQCISF+A + P
Sbjct:    1 MASSMISSPAVTTVNRAG---AGMVAPFTG-------------------------------------LKSMAGLP-TRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.750e-65
Identity = 128/217 (58.99%), Postives = 147/217 (67.74%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691
            MASSM+SS  V T    S AQA+MVAPFT                                     GLKSS++FP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L+D  L KE+ YLLR+ WIPC+EFELE G+VYREH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +K YP +F RII FD  RQVQCISF+A + P
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFT-------------------------------------GLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 9.809e-65
Identity = 130/217 (59.91%), Postives = 144/217 (66.36%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691
            MASSMISS  V T NRA    A  VAPFTG                                     LKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYRE+H SPGYYDGRYWTMWKLP++GCTDA+QVLKE+ E +  YP+ F RII FD  RQVQCISF+A + P
Sbjct:    1 MASSMISSPAVTTVNRAG---AGTVAPFTG-------------------------------------LKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.673e-64
Identity = 127/213 (59.62%), Postives = 148/213 (69.48%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLA 679
            MASS++SS  VAT  R++ AQASMVAPF                                     TGLKS+++FP ++KTN DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LS E LL EI YLL++GW+PCLEFE E G+VYREH SSPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K YP +  RII FD  RQVQCISF+A
Sbjct:    1 MASSIMSSAAVAT--RSNGAQASMVAPF-------------------------------------TGLKSNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIA 174          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.673e-64
Identity = 120/213 (56.34%), Postives = 149/213 (69.95%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLA 679
            MASS++SS  VA+ N AS AQASMVAPFT                                     GLKSS+ FP T+K N DIT++ASN G+VQCMKVWPP GL+KFETLSYLP +S+E L KE  YLLR+GW+PC+EF++  G+VYRE+H SPG+YDGRYWTMWKLPM+GCTD++QV++E+ E +K YP +F R+I FD  RQVQCISF+A
Sbjct:    1 MASSILSSAAVASVNSASPAQASMVAPFT-------------------------------------GLKSSAGFPITRKNNVDITTLASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIA 176          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.185e-64
Identity = 126/213 (59.15%), Postives = 146/213 (68.54%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLA 679
            MASS++S+ TVAT   A+ AQASM+A F GL                                     KS+++FP T+K + DITSIASNGGRV+CM VWPP   KK+ETLSYLP LSDE LLKEI YLL+ GW+PCLEFE E G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++ RII FD  RQVQCISF+A
Sbjct:    1 MASSVMSTATVATG--ANAAQASMIASFNGL-------------------------------------KSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIA 174          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.185e-64
Identity = 126/219 (57.53%), Postives = 151/219 (68.95%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQA-SMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAPG 694
            MASS+ISS  VAT  R ++ QA SM+APFTG                                     LKS++ FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++ RII FD  RQVQCISF+A +  G
Sbjct:    1 MASSVISSAAVAT--RTNVTQAGSMIAPFTG-------------------------------------LKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.854e-64
Identity = 125/218 (57.34%), Postives = 151/218 (69.27%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAPG 694
            MASS++SS  VAT  R+++AQA+MVAPF                                     TGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++ RII FD  RQVQCISF+A +  G
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPF-------------------------------------TGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.854e-64
Identity = 125/218 (57.34%), Postives = 151/218 (69.27%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAPG 694
            MASS++SS  VAT  R+++AQA+MVAPF                                     TGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++ RII FD  RQVQCISF+A +  G
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPF-------------------------------------TGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 8.304e-64
Identity = 114/175 (65.14%), Postives = 139/175 (79.43%), Query Frame = 2
Query:  155 ATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLA 679
            A+   +N  T++A+     Q   V P  GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RII FD  RQVQC+SF+A
Sbjct:    2 ASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIA 175          
The following BLAST results are available for this feature:
BLAST of EY660140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
RBS4_SOYBN5.750e-6560.37Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1B_ARATH5.750e-6558.99Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS_GLYTO9.809e-6559.91Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_STELP1.673e-6459.62Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA1.673e-6456.34Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN2.185e-6459.15Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLTU2.185e-6457.53Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TOBAC2.854e-6457.34Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_NICSY2.854e-6457.34Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_MESCR8.304e-6465.14Ribulose bisphosphate carboxylase small chain 4, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660140 ID=EY660140; Name=EY660140; organism=Citrus sinensis; type=EST; length=957bp
CCACGCGTCCGTGCAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCT
CAATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCT
CAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTT
CCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACG
GCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCCTCAAGTCT
TCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCAT
TGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTG
GCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAA
GCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTG
CTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGCT
CACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATG
TATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTTGGGAGGTCCA
GAAAGGATACCCACATTCATTTCGTCGAATTATCNGATTTGACAAACAGC
GTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCCAAGCACCAGGCGTCTAG
GTTCCCAAATTAATTTTGTGTACCACCCATGCAATANTGGTGATTATTAT
TATGGGGAACCCCCATAATGATCATTCAATCAATGGGGGGTCCGGTTTGC
GGTTAATTTGGAACTTAGCTGCTGGTGCTGCTGGCCCAACCTTTTTGGGT
TTCCCCCCGAATTTTGGCTTTTTTTGTTAAATAAATTTTAAAAAATGGAA
CCCTTGTGTTTAAGTTCCCTAAAANNNGNNNNNGNNTGGANATAGAAATA
AAGATAA
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