EY660140
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 2.045e-62 Identity = 113/162 (69.75%), Postives = 131/162 (80.86%), Query Frame = 2 Query: 197 NGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAA 682 N VQ P TGLKSS+ FP TKK NNDITSI SNG RV CM+VWPP G KKFETLSYLPPL+DE LLKE+ YLLR GW+PC+EFELEKG+V+R+++SSPGYYDGRYWTMW+LP++G TDA QVLKEV E + YP +F RII FD RQVQCISF+A+ Sbjct: 13 NRAPVQANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIAS 173
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 2.045e-62 Identity = 123/213 (57.75%), Postives = 146/213 (68.54%), Query Frame = 2 Query: 41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLA 679 MASSM++ST A RA AQ+SMVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP F RII FD +RQVQCISF+A Sbjct: 1 MASSMMAST--AAVARAGPAQSSMVAPFN-------------------------------------GLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIA 173
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 2.671e-62 Identity = 114/175 (65.14%), Postives = 138/175 (78.86%), Query Frame = 2 Query: 155 ATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLA 679 A+ +N T++A+ Q V P GLKS SAFP T+K NNDITS+ASNGGRVQCM VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RII FD RQVQC+SF+A Sbjct: 2 ASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIA 174
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 3.489e-62 Identity = 112/165 (67.88%), Postives = 130/165 (78.79%), Query Frame = 2 Query: 185 SIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLA 679 ++A+ G Q V P GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD LL ++ YLL GWIPC+EFELE +VYRE+H SPGY DGRYWTMWKLPMYGCTD QVL EV E +K YP +F RII FD +RQVQC+SF+A Sbjct: 14 AVAATSGGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIA 177
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.731e-61 Identity = 110/166 (66.27%), Postives = 132/166 (79.52%), Query Frame = 2 Query: 182 TSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLA 679 T+ + G Q V P GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP F RII FD +RQVQCISF+A Sbjct: 9 TAAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIA 173
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 2.261e-61 Identity = 119/211 (56.40%), Postives = 146/211 (69.19%), Query Frame = 2 Query: 62 STTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAPG 694 S+TVAT +RA+ AQA+MVAPFT GLKS++AFPATKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++ L KE+ YLLR+ W+PCLEFELE G+VYRE+ SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +K YP ++ RII FD RQVQCISF+A++ G Sbjct: 5 SSTVATVSRAAPAQANMVAPFT-------------------------------------GLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 6.579e-61 Identity = 117/211 (55.45%), Postives = 144/211 (68.25%), Query Frame = 2 Query: 62 STTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAPG 694 S++VAT +R + AQA+MVAPFT GLKS++AFP TKK N D +++ SNGGRVQCMKVWPP GLKK+ETLSYLPPL++ L KE+ YLLR W+PCLEFELE G+VYRE+ SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +K YP ++ RII FD RQVQCI F+A++ G Sbjct: 5 SSSVATVSRTAPAQANMVAPFT-------------------------------------GLKSNAAFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 1.122e-60 Identity = 118/211 (55.92%), Postives = 145/211 (68.72%), Query Frame = 2 Query: 62 STTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAPG 694 S+TVAT +RA+ AQA+MVAPFT GLKS+ AFPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++ L KE+ YLLR+ W+PCLEFELE G+VYRE+ SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +K YP ++ RII FD RQVQCISF+A++ G Sbjct: 5 SSTVATVSRAAPAQANMVAPFT-------------------------------------GLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 1.914e-60 Identity = 119/213 (55.87%), Postives = 145/213 (68.08%), Query Frame = 2 Query: 41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLA 679 MASSM++ST A RA AQ++MVAPF GL+SS AFPAT+K N +++++ SNGG+V CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP F RII FD +RQVQCISF+A Sbjct: 1 MASSMMAST--AAVARAGPAQSNMVAPFN-------------------------------------GLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIA 173
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.764e-59 Identity = 117/211 (55.45%), Postives = 144/211 (68.25%), Query Frame = 2 Query: 47 SSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLA 679 +S++S+ V TA+ A AQA+MVAPF+G LKS+SAFP ++K+N DITS+A+NGGRV CM+VWPP LKKFETLSYLP LS+E+LLKEI+YLL GW+PCLEFE+ VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV EV E + YP + RII FD +RQVQCISF+A Sbjct: 2 ASLMSNAAVVTASTA--AQANMVAPFSG-------------------------------------LKSTSAFPVSRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIA 173 The following BLAST results are available for this feature:
BLAST of EY660140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 121
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Sequences
The
following sequences are available for this feature:
EST sequence >EY660140 ID=EY660140; Name=EY660140; organism=Citrus sinensis; type=EST; length=957bpback to top |