EY660140
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 2.696e-30 Identity = 62/122 (50.82%), Postives = 80/122 (65.57%), Query Frame = 2 Query: 329 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFL 676 M VW P K FET SYLPPLSDE + ++ Y++ +GWIPCLEF E +K +V E G YYD RYWTMWKLPM+GC D QVL+E+ K +P ++ R++ FD Q+QVQ + FL Sbjct: 46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 167
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.599e-30 Identity = 61/122 (50.00%), Postives = 80/122 (65.57%), Query Frame = 2 Query: 329 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFL 676 M VW P K FET SYLPPL+DE + ++ Y++ +GWIPCLEF E +K +V E G YYD RYWTMWKLPM+GC D QVL+E+ K +P ++ R++ FD Q+QVQ + FL Sbjct: 46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 167
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.338e-29 Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 2 Query: 332 KVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFE------LEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFL 676 KVW P K++ET SYLPPL+++ + +++ Y++ +GW PCLEF + R S GYYD RYWTMWKLPM+GCTD +QVL+EV Q +P+ + R++ FD +QVQC+ FL Sbjct: 30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFL 150
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.338e-29 Identity = 67/152 (44.08%), Postives = 87/152 (57.24%), Query Frame = 2 Query: 260 FPATKKTNNDITSIASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691 FP K N ASN +C M VW P K FET SYLPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P ++ R++ FD RQVQ FL + P Sbjct: 22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.133e-28 Identity = 66/157 (42.04%), Postives = 86/157 (54.78%), Query Frame = 2 Query: 239 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691 G SA P + A N R M VW P K FET SYLPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P ++ R++ FD RQVQ FL + P Sbjct: 15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 4.304e-28 Identity = 59/127 (46.46%), Postives = 79/127 (62.20%), Query Frame = 2 Query: 329 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691 M VW P K FET SYLPPL+DE + K++ Y+L + W PCLEF ++ + E+ + G Y D RYWTMWKLPM+GCTD +QVL E+ K +P ++ R++ FD RQVQ FL + P Sbjct: 43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 5.622e-28 Identity = 59/127 (46.46%), Postives = 78/127 (61.42%), Query Frame = 2 Query: 329 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691 M VW P K FET SYLPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P ++ R++ FD RQVQ FL + P Sbjct: 45 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 7.342e-28 Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 2 Query: 461 ELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691 ELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +K YP++F RII FD RQVQCISF+A + P Sbjct: 1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 9.589e-28 Identity = 59/127 (46.46%), Postives = 79/127 (62.20%), Query Frame = 2 Query: 329 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691 M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTDA+QVL E+ K +P ++ R++ FD RQVQ FL + P Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.636e-27 Identity = 58/127 (45.67%), Postives = 78/127 (61.42%), Query Frame = 2 Query: 329 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691 M VW P K FET SYLPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL ++ K +P ++ R++ FD RQVQ FL + P Sbjct: 44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170 The following BLAST results are available for this feature:
BLAST of EY660140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 121
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Sequences
The
following sequences are available for this feature:
EST sequence >EY660140 ID=EY660140; Name=EY660140; organism=Citrus sinensis; type=EST; length=957bpback to top |