EY660140

Overview
NameEY660140
Unique NameEY660140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.696e-30
Identity = 62/122 (50.82%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  329 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFL 676
            M VW P   K FET SYLPPLSDE +  ++ Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++ R++ FD Q+QVQ + FL
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 167          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.599e-30
Identity = 61/122 (50.00%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  329 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFL 676
            M VW P   K FET SYLPPL+DE +  ++ Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++ R++ FD Q+QVQ + FL
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 167          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.338e-29
Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 2
Query:  332 KVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFE------LEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFL 676
            KVW P   K++ET SYLPPL+++ + +++ Y++ +GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD +QVL+EV   Q  +P+ + R++ FD  +QVQC+ FL
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFL 150          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.338e-29
Identity = 67/152 (44.08%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  260 FPATKKTNNDITSIASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691
            FP   K N      ASN    +C  M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P ++ R++ FD  RQVQ   FL  + P
Sbjct:   22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.133e-28
Identity = 66/157 (42.04%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  239 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691
            G    SA P          + A N  R   M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P ++ R++ FD  RQVQ   FL  + P
Sbjct:   15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.304e-28
Identity = 59/127 (46.46%), Postives = 79/127 (62.20%), Query Frame = 2
Query:  329 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691
            M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P ++ R++ FD  RQVQ   FL  + P
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.622e-28
Identity = 59/127 (46.46%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  329 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691
            M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P ++ R++ FD  RQVQ   FL  + P
Sbjct:   45 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.342e-28
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 2
Query:  461 ELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691
            ELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +K YP++F RII FD  RQVQCISF+A + P
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.589e-28
Identity = 59/127 (46.46%), Postives = 79/127 (62.20%), Query Frame = 2
Query:  329 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+QVL E+    K +P ++ R++ FD  RQVQ   FL  + P
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY660140 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.636e-27
Identity = 58/127 (45.67%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  329 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVWEVQKGYPHSFRRIIXFDKQRQVQCISFLAAQAP 691
            M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL ++    K +P ++ R++ FD  RQVQ   FL  + P
Sbjct:   44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170          
The following BLAST results are available for this feature:
BLAST of EY660140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
RBS2_CHLRE2.696e-3050.82Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_CHLRE4.599e-3050.00Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_CHLMO1.338e-2947.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_ACECL1.338e-2944.08Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS4_ACECL1.133e-2842.04Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS6_ACECL4.304e-2846.46Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_ACECL5.622e-2846.46Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_SINAL7.342e-2871.43Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS3_ACEAT9.589e-2846.46Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS7_ACECL1.636e-2745.67Ribulose bisphosphate carboxylase small chain 7, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660140 ID=EY660140; Name=EY660140; organism=Citrus sinensis; type=EST; length=957bp
CCACGCGTCCGTGCAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCT
CAATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCT
CAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTT
CCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACG
GCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCCTCAAGTCT
TCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCAT
TGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTG
GCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAA
GCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTG
CTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGCT
CACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATG
TATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTTGGGAGGTCCA
GAAAGGATACCCACATTCATTTCGTCGAATTATCNGATTTGACAAACAGC
GTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCCAAGCACCAGGCGTCTAG
GTTCCCAAATTAATTTTGTGTACCACCCATGCAATANTGGTGATTATTAT
TATGGGGAACCCCCATAATGATCATTCAATCAATGGGGGGTCCGGTTTGC
GGTTAATTTGGAACTTAGCTGCTGGTGCTGCTGGCCCAACCTTTTTGGGT
TTCCCCCCGAATTTTGGCTTTTTTTGTTAAATAAATTTTAAAAAATGGAA
CCCTTGTGTTTAAGTTCCCTAAAANNNGNNNNNGNNTGGANATAGAAATA
AAGATAA
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