EY660135

Overview
NameEY660135
Unique NameEY660135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.467e-46
Identity = 96/182 (52.75%), Postives = 127/182 (69.78%), Query Frame = 2
Query:  239 EIPEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAN 769
            E P YLTGE PGDYG+D+ GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YRI  G   ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA+
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 185          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.178e-46
Identity = 107/199 (53.77%), Postives = 129/199 (64.82%), Query Frame = 2
Query:  185 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 763
            WYGPDR    P+ L   SE  P YLTGE PGDYG+D+  +S  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L PGG FDPLGLA DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct:   50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 243          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.653e-45
Identity = 101/202 (50.00%), Postives = 127/202 (62.87%), Query Frame = 2
Query:  182 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAN 769
            ++YGPD       G   + + P   TGE PGDYG+D+ GLS  P+ F +Y+  ELIHAR  +LGA G + PE   ++ G   G  A+WFK GA +     LNY G    I   N+V  +  ++VL+G  E YR+  G   E  D L+PG  FDPLGLA DPD FA LKVKEIKNGRLAMFA LGFF+QA VTG+GP+ENL +
Sbjct:   56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTD 253          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.936e-45
Identity = 101/199 (50.75%), Postives = 128/199 (64.32%), Query Frame = 2
Query:  185 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 763
            WYGPDR  +L       ++ P YL GE PGDYG+D+ GLS  P+ F+K +A E+IH RWAMLGA G I PE   K+      E VWFK G+ +     L+Y G    +    + AV+  ++VL+G  E +RI    G+   + L+PGG  FDPLGLA DP  FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct:   47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.144e-44
Identity = 101/200 (50.50%), Postives = 130/200 (65.00%), Query Frame = 2
Query:  185 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 763
            WYGPDR  +L       ++ P YL GE PGDYG+D+ GLS  P+ F++ +A E+IH RWAMLGA G + PE   K+      E VWFK G+ +     L+Y G    +    + AV+  +++L+G  E +RI NGLD     + L+PGG  FDPLGLA DP  FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.955e-43
Identity = 97/200 (48.50%), Postives = 130/200 (65.00%), Query Frame = 2
Query:  185 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAN 769
            WYG DR ++L  G L  S  P YLTGE PGDYG+D+ GLS  P+ F+K +  E+IH RWA+    G + PE   + G   G E VWFK G+ +     L++ G    ++   + A+ A ++VL+G  E Y +  G   ++ D L+ GG FDPLGL  DP++FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA+
Sbjct:   48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 243          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.288e-42
Identity = 97/200 (48.50%), Postives = 126/200 (63.00%), Query Frame = 2
Query:  185 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAN 769
            WYGPDR  +L        E P YLTGE          GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I+   + A+ A +++L+G  E YRI  G   ++ D ++PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA+
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 235          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.571e-37
Identity = 88/182 (48.35%), Postives = 118/182 (64.84%), Query Frame = 2
Query:  239 EIPEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAV-IAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAN 769
            E P YLTGE PGDYG+D+ GLS  P+ F+K +  E+IH+R AM  A G I PE  +  G   G EAVWFK GA +     L+Y G    ++   + A+   +++L+G  E YRI  G   ++ D L+PG  FD LGLA+D + FA LKVKE+KNGRLAMF+M GFF+QA V+ +  +ENLA+
Sbjct:   68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLAD 247          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 7.705e-32
Identity = 79/165 (47.88%), Postives = 101/165 (61.21%), Query Frame = 2
Query:  185 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQF 655
            WYGPDR  +L        + P YLTGE PGDYG+D+ GLS  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  D+L+PGG FDPLGLA+DP+ F
Sbjct:   48 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNP---NLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.928e-31
Identity = 81/195 (41.54%), Postives = 111/195 (56.92%), Query Frame = 2
Query:  245 PEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ--AYVTGEGPVENLA---------NISVILLPQ 793
            P YL G  PGD+G+DS GL + P +  +Y+  ELIH RWAML   G I+PEA      N      W       + G    Y G+ +P   +  ++A E + +   E+ R +   D E K +PGG FDPLG +KDP +F  LKVKEIKNGRLA+ A++GF +Q  AY+ G GP+ENLA         NI  +++P+
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL--GNWVKAQEW-----AAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR-SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYL-GTGPLENLATHLADPWHNNIGDVIIPK 241          
The following BLAST results are available for this feature:
BLAST of EY660135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB22_CUCSA2.467e-4652.75Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_PINTH7.178e-4653.77Chlorophyll a-b binding protein type I, chloroplas... [more]
CB2_DUNSA4.653e-4550.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC7.936e-4550.75Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU5.144e-4450.50Chlorophyll a-b binding protein of LHCII type III,... [more]
CB48_MAIZE1.955e-4348.50Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_SOYBN6.288e-4248.50Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_MALDO3.571e-3748.35Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB21_SILPR7.705e-3247.88Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB11_SOLLC2.928e-3141.54Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660135 ID=EY660135; Name=EY660135; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTG
TTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTT
GCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGT
CGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACC
GAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAG
TACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATTCTTTTGGTCT
CAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTC
ATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCC
TTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGAC
TGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACA
TCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGT
GGTGCTGAATATTATAGAATCACCAACGGTTTGGATTTGGAGGACAAGCT
TCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATCCTGACC
AATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAGACTTGCAATG
TTTGCCATGCTTGGTTTCTTTCTCCAAGCTTATGTCACAGGTGAAGGTCC
AGTTGAGAACCTTGCTAACATCTCAGTGATCCTTTTGCCACAACTTGCTT
ACCGTGATCTCCGGAAACGCAGAGAGAGCTCCCACCCTGTGATTTCANGT
GGTCTGGTGGTCTTTTCACTCGAATCTAAATGCATGTACATCTCATCATC
AGA
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