EY660135

Overview
NameEY660135
Unique NameEY660135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:188..1092. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.538e-23
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  533 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAN 769
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA+
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 246          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.538e-23
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  533 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAN 769
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA+
Sbjct:   15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 95          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.538e-23
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  533 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAN 769
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA+
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 244          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.538e-23
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  533 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAN 769
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA+
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 244          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.902e-22
Identity = 72/219 (32.88%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  245 PEYLTGEVPGDYGYDSFGLSKKPD-------------------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 766
            P++L G + GDYG+D FGL K  +                                              +++  ELIH RWAML   G +  E              W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA  TG+GP+ N A
Sbjct:   65 PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWA 272          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.484e-22
Identity = 70/186 (37.63%), Postives = 98/186 (52.69%), Query Frame = 2
Query:  245 PEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 763
            P+YLTG + GD G+D  GL++ P++   +   EL++ RWAMLG AG ++PE F K G    PE  W+       D     YF  +  + ++  ++   V +    +  I N G   +D +            +PGG F+PL  A  P Q A  K KE+ NGRLAM A LGF +Q  VTG+GP ENL
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGKGPFENL 234          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.103e-21
Identity = 65/186 (34.95%), Postives = 94/186 (50.54%), Query Frame = 2
Query:  245 PEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 763
            P YLTG +PGD G+D  GL++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G          YF  +  + ++  +++  V +    +  I N              L   +  +PGG F+PL  A   +     K KEI NGRLAM A LGF +Q  VTG+GP +NL
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLE----AKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNL 233          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.103e-21
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  509 NLVFAVIAEIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 760
            +L+  +  +++L+G  E YR  N      G DL D+L+PGGPFDPLGLA DPD F  LKVKEIKNGRLAM  MLGF+ QA VTGEGPVEN
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVEN 98          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.180e-20
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 2
Query:  533 EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAN 769
            +++L+G  E YR+     L   ED L+PGG FDPL    DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA+
Sbjct:   22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 103          
BLAST of EY660135 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.144e-17
Identity = 63/178 (35.39%), Postives = 86/178 (48.31%), Query Frame = 2
Query:  245 PEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR-----ITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 763
            P YLTGE  GD G+D  GL+  P  F + Q  E+ H R +ML   G ++PE              WF+    + D    N           FAV+A + +V   EY+R     + N  +  D+ +PG  FDPL L  +       K  EIKNGRLAM  M G  +Q++VTG+ P+ NL
Sbjct:  381 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG--------NGAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINNL 528          

HSP 2 Score: 86.6557 bits (213), Expect = 2.037e-16
Identity = 59/181 (32.60%), Postives = 84/181 (46.41%), Query Frame = 2
Query:  236 SEIPEYLTGEVPGDYGYDSFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 766
            +E P  LTGE P D G+D   L+  PD +++ +  E+ H R AML   G I+PE   K          WF+ G   +DG  L +                + +    EY+R   G + +    D+ +PG  FDPL L  D       +  E+KNGRLA+ A+ G   Q   TGE P+ NL+
Sbjct:  194 AEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLS 344          
The following BLAST results are available for this feature:
BLAST of EY660135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB2E_SOLLC8.538e-2365.43Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC8.538e-2365.43Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC8.538e-2365.43Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC8.538e-2365.43Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB4A_ARATH1.902e-2232.88Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB24_ARATH2.484e-2237.63Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA2.103e-2134.95Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB21_EUGGR2.103e-2161.11Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_RAPSA5.180e-2059.76Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
LH18_EUGGR9.144e-1735.39Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660135 ID=EY660135; Name=EY660135; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTG
TTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTT
GCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGT
CGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACC
GAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAG
TACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATTCTTTTGGTCT
CAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTC
ATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCC
TTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGAC
TGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACA
TCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGT
GGTGCTGAATATTATAGAATCACCAACGGTTTGGATTTGGAGGACAAGCT
TCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATCCTGACC
AATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAGACTTGCAATG
TTTGCCATGCTTGGTTTCTTTCTCCAAGCTTATGTCACAGGTGAAGGTCC
AGTTGAGAACCTTGCTAACATCTCAGTGATCCTTTTGCCACAACTTGCTT
ACCGTGATCTCCGGAAACGCAGAGAGAGCTCCCACCCTGTGATTTCANGT
GGTCTGGTGGTCTTTTCACTCGAATCTAAATGCATGTACATCTCATCATC
AGA
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