EY660131

Overview
NameEY660131
Unique NameEY660131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB_DICDI (Nuclear transcription factor Y subunit beta OS=Dictyostelium discoideum GN=nfyB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.014e-37
Identity = 75/93 (80.65%), Postives = 85/93 (91.40%), Query Frame = 3 
Query:  216 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREME 494
            REQDR+LPIAN+ RIMKKALP NAK++KDAKETVQ+CVSEFISFIT EASDKCQ+EKRKTING+D++ AM +LGFE YVEPLKVYL KYRE E
Sbjct:   47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTINGEDIIAAMVSLGFENYVEPLKVYLLKYRETE 139
[Close]
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.305e-36
Identity = 68/100 (68.00%), Postives = 90/100 (90.00%), Query Frame = 3 
Query:  204 ELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEK 503
            E + REQDRF+PIANV RIM++ LPA+AKIS D+KET+QECVSE+ISFITGEA+++CQRE+RKTI  +D+LWAM+ LGF++Y+EPL +YL +YRE+EGE+
Sbjct:   53 ECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152
[Close]
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.305e-36
Identity = 70/99 (70.71%), Postives = 83/99 (83.84%), Query Frame = 3 
Query:  207 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEK 503
            +  +EQDR LPIANV RIMK  LPANAK+SK+AKET+QECVSEFISF+TGEASDKC +EKRKT+NGDD+ WAM  LGF++Y   LK YL +YR +EGEK
Sbjct:   47 MMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145
[Close]
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB_RAT (Nuclear transcription factor Y subunit beta OS=Rattus norvegicus GN=Nfyb PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.462e-35
Identity = 73/99 (73.74%), Postives = 88/99 (88.89%), Query Frame = 3 
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRE-MEGEK 503
            S REQD +LPIANV+RIMK A+P   KI+KDAKE VQECVSEFISFIT EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQK+RE M+GEK
Sbjct:   51 SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
[Close]
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB_MOUSE (Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.462e-35
Identity = 73/99 (73.74%), Postives = 88/99 (88.89%), Query Frame = 3 
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRE-MEGEK 503
            S REQD +LPIANV+RIMK A+P   KI+KDAKE VQECVSEFISFIT EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQK+RE M+GEK
Sbjct:   51 SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
[Close]
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB_HUMAN (Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.462e-35
Identity = 73/99 (73.74%), Postives = 88/99 (88.89%), Query Frame = 3 
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRE-MEGEK 503
            S REQD +LPIANV+RIMK A+P   KI+KDAKE VQECVSEFISFIT EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQK+RE M+GEK
Sbjct:   51 SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
[Close]
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB_HORSE (Nuclear transcription factor Y subunit beta OS=Equus caballus GN=NFYB PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.462e-35
Identity = 73/99 (73.74%), Postives = 88/99 (88.89%), Query Frame = 3 
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRE-MEGEK 503
            S REQD +LPIANV+RIMK A+P   KI+KDAKE VQECVSEFISFIT EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQK+RE M+GEK
Sbjct:   51 SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
[Close]
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB_CHICK (Nuclear transcription factor Y subunit beta OS=Gallus gallus GN=NFYB PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.462e-35
Identity = 73/99 (73.74%), Postives = 88/99 (88.89%), Query Frame = 3 
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRE-MEGEK 503
            S REQD +LPIANV+RIMK A+P   KI+KDAKE VQECVSEFISFIT EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQK+RE M+GEK
Sbjct:   49 SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 147
[Close]
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB_BOVIN (Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.462e-35
Identity = 73/99 (73.74%), Postives = 88/99 (88.89%), Query Frame = 3 
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRE-MEGEK 503
            S REQD +LPIANV+RIMK A+P   KI+KDAKE VQECVSEFISFIT EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQK+RE M+GEK
Sbjct:   51 SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
[Close]
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB_PETMA (Nuclear transcription factor Y subunit beta OS=Petromyzon marinus GN=NFYB PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.199e-35
Identity = 72/97 (74.23%), Postives = 88/97 (90.72%), Query Frame = 3 
Query:  216 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRE-MEGEK 503
            REQD +LPIANV+RIMK ++P++ KI+KDAKE VQECVSEFISFIT EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK YLQKYRE M+GEK
Sbjct:   54 REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEK 150
The following BLAST results are available for this feature:
BLAST of EY660131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYB_DICDI2.014e-3780.65Nuclear transcription factor Y subunit beta OS=Dic... [more]
NFYB6_ARATH1.305e-3668.00Nuclear transcription factor Y subunit B-6 OS=Arab... [more]
NFYB5_ARATH1.305e-3670.71Nuclear transcription factor Y subunit B-5 OS=Arab... [more]
NFYB_RAT2.462e-3573.74Nuclear transcription factor Y subunit beta OS=Rat... [more]
NFYB_MOUSE2.462e-3573.74Nuclear transcription factor Y subunit beta OS=Mus... [more]
NFYB_HUMAN2.462e-3573.74Nuclear transcription factor Y subunit beta OS=Hom... [more]
NFYB_HORSE2.462e-3573.74Nuclear transcription factor Y subunit beta OS=Equ... [more]
NFYB_CHICK2.462e-3573.74Nuclear transcription factor Y subunit beta OS=Gal... [more]
NFYB_BOVIN2.462e-3573.74Nuclear transcription factor Y subunit beta OS=Bos... [more]
NFYB_PETMA4.199e-3574.23Nuclear transcription factor Y subunit beta OS=Pet... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-H04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660131 ID=EY660131; Name=EY660131; organism=Citrus sinensis; type=EST; length=881bp
CCACGCGTCCGCCCATTTTACCCCTCTTGTTTTCTCATAATTCTCAATTC
CCCACTCTCCTGAAAAATCCAGTCTTTATTATCTGACAAAATCAAAATTC
GATCTTTCGATCTGGGTATTTTGAGAATTTTTTCTTTTTAAATATTGTGA
TGGCTGATTCGGACAACGATTCTGGGGGGCAAAACAACAGCAACGCAAAC
AGCGAGCTGTCGGCGAGAGAACAGGATAGGTTCTTGCCGATAGCTAATGT
AAGCAGGATAATGAAGAAGGCTTTGCCAGCGAATGCGAAGATATCAAAGG
ACGCTAAAGAGACAGTGCAAGAGTGTGTGTCGGAGTTTATAAGTTTCATA
ACTGGCGAAGCTTCTGACAAGTGTCAGCGCGAGAAGCGGAAGACGATCAA
CGGTGATGATTTGTTGTGGGCCATGACGACTTTAGGCTTCGAAGAGTACG
TGGAACCCTTGAAGGTCTATTTGCAAAAGTATAGGGAGATGGAGGGAGAG
AAGACTTCCATGGGGAGGGAGAATGACAGCGGTGATACCGGAGGCGGCAC
TGGATCATCCGGTGGCGGATCAGCTGCTGGTGGTGAAGCCAGTGATGGCC
GTCATGCTGGTGGGGGATACAATGGATGGATGTACCGTGGGATGATGATG
ATGCGACATCAAGACACGTTTATGGCTCTGGGGGATTTATCATCATCATC
TTCATCAGATGGGCGCTGGAATAAGTGGGTCCCCCGCTGCATCGATTCTG
CCTCCCCAAAGGCGGCGGAGCAACCATGGAGTTATTAGGCAAGTAGGTCT
ATTTCGACCTTCGGCTCTGGAACTTTAATGGTTTATTGCACCACCTAAAT
TGTTCCTAAATTCTATTAAAAACGCACCTGT
back to top