EY660131

Overview
NameEY660131
Unique NameEY660131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660131_ssr641 microsatellite EY660131_ssr641:641..652. BLAST: Citrus ESTs to Prunus persica proteins V1
EY660131_ssr689 microsatellite EY660131_ssr689:689..700. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.555e-34
Identity = 64/99 (64.65%), Postives = 88/99 (88.89%), Query Frame = 3
Query:  213 AREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTS 509
            AREQD+++PIANV RIM+K LP++AKIS DAKET+QECVSE+ISF+TGEA+++CQRE+RKTI  +D+LWAM+ LGF+ YV+PL V++ +YRE+E ++ S
Sbjct:   27 AREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGS 125          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB4_ARATH (Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana GN=NFYB4 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.398e-30
Identity = 60/96 (62.50%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  219 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKT 506
            ++DR LPIANV R+MK+ LP+NAKISK+AK+TVQEC +EFISF+T EAS+KC RE RKT+NGDD+ WA++TLG + Y + +  +L KYRE E E+T
Sbjct:    3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVNGDDIWWALSTLGLDNYADAVGRHLHKYREAERERT 98          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: HAP3_YEAST (Transcriptional activator HAP3 OS=Saccharomyces cerevisiae GN=HAP3 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.312e-30
Identity = 61/99 (61.62%), Postives = 78/99 (78.79%), Query Frame = 3
Query:  216 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTSM 512
            REQDR+LPI NV+R+MK  LP +AK+SKDAKE +QECVSE ISF+T EASD+C  +KRKTING+D+L ++  LGFE Y E LK+YL KYR+ +  K  +
Sbjct:   36 REQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQQQALKNQL 134          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: HAP3_SCHPO (Transcriptional activator hap3 OS=Schizosaccharomyces pombe GN=hap3 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.937e-30
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 3
Query:  234 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTSM 512
            LPIANV+RIMK ALP NAKISK+AK+ VQ+CVSEFISF+TGEAS++C +EKRKTI G+D+L A+ TLGFE Y E LK+ L KYRE +    SM
Sbjct:   12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDVLLALNTLGFENYAEVLKISLTKYREQQARSASM 104          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: HAP3_KLULA (Transcriptional activator HAP3 OS=Kluyveromyces lactis GN=HAP3 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.545e-29
Identity = 61/98 (62.24%), Postives = 75/98 (76.53%), Query Frame = 3
Query:  219 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTSM 512
            EQDR+LPI NV+R+MK  LPA  K+SKDAKE +QECVSEFISF+T EA D+C   KRKTING+D+L ++  LGFE Y E LK+YL KYR+ +  K  M
Sbjct:   22 EQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRKTINGEDILLSLHALGFENYAEVLKIYLAKYRQQQAIKNQM 119          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB_XENLA (Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus laevis GN=nfyb PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 49/64 (76.56%), Postives = 60/64 (93.75%), Query Frame = 3
Query:  315 VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRE-MEGEK 503
            VQECVSEFISFIT EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQK+RE M+GEK
Sbjct:    1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 64          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB1_ORYSJ (Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp. japonica GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.166e-15
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  234 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREME 494
            LP+AN+ R++KK LP  AKI   AK    +C  EF+ F+  EAS+K + E R+T+  +D L +   LGF+ YV+P+  Y+  YRE E
Sbjct:   34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFE 120          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: DPOE3_RAT (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.705e-13
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  207 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKY-REMEGEK 503
            ++ R +D  LP A ++RI+K+ALP    ISK+A+  +    S F+ + T  A++   + KRKT+N  D+L AM  + F+ +V PLK  L+ Y RE +G+K
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: DPOE3_PONAB (DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.705e-13
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  207 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKY-REMEGEK 503
            ++ R +D  LP A ++RI+K+ALP    ISK+A+  +    S F+ + T  A++   + KRKT+N  D+L AM  + F+ +V PLK  L+ Y RE +G+K
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: DPOE3_HUMAN (DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.705e-13
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  207 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKY-REMEGEK 503
            ++ R +D  LP A ++RI+K+ALP    ISK+A+  +    S F+ + T  A++   + KRKT+N  D+L AM  + F+ +V PLK  L+ Y RE +G+K
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100          
The following BLAST results are available for this feature:
BLAST of EY660131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYB9_ARATH3.555e-3464.65Nuclear transcription factor Y subunit B-9 OS=Arab... [more]
NFYB4_ARATH1.398e-3062.50Nuclear transcription factor Y subunit B-4 OS=Arab... [more]
HAP3_YEAST5.312e-3061.62Transcriptional activator HAP3 OS=Saccharomyces ce... [more]
HAP3_SCHPO6.937e-3067.74Transcriptional activator hap3 OS=Schizosaccharomy... [more]
HAP3_KLULA1.545e-2962.24Transcriptional activator HAP3 OS=Kluyveromyces la... [more]
NFYB_XENLA1.186e-2176.56Nuclear transcription factor Y subunit beta (Fragm... [more]
NFYB1_ORYSJ2.166e-1543.68Nuclear transcription factor Y subunit B-1 OS=Oryz... [more]
DPOE3_RAT7.705e-1339.00DNA polymerase epsilon subunit 3 OS=Rattus norvegi... [more]
DPOE3_PONAB7.705e-1339.00DNA polymerase epsilon subunit 3 OS=Pongo abelii G... [more]
DPOE3_HUMAN7.705e-1339.00DNA polymerase epsilon subunit 3 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-H04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660131 ID=EY660131; Name=EY660131; organism=Citrus sinensis; type=EST; length=881bp
CCACGCGTCCGCCCATTTTACCCCTCTTGTTTTCTCATAATTCTCAATTC
CCCACTCTCCTGAAAAATCCAGTCTTTATTATCTGACAAAATCAAAATTC
GATCTTTCGATCTGGGTATTTTGAGAATTTTTTCTTTTTAAATATTGTGA
TGGCTGATTCGGACAACGATTCTGGGGGGCAAAACAACAGCAACGCAAAC
AGCGAGCTGTCGGCGAGAGAACAGGATAGGTTCTTGCCGATAGCTAATGT
AAGCAGGATAATGAAGAAGGCTTTGCCAGCGAATGCGAAGATATCAAAGG
ACGCTAAAGAGACAGTGCAAGAGTGTGTGTCGGAGTTTATAAGTTTCATA
ACTGGCGAAGCTTCTGACAAGTGTCAGCGCGAGAAGCGGAAGACGATCAA
CGGTGATGATTTGTTGTGGGCCATGACGACTTTAGGCTTCGAAGAGTACG
TGGAACCCTTGAAGGTCTATTTGCAAAAGTATAGGGAGATGGAGGGAGAG
AAGACTTCCATGGGGAGGGAGAATGACAGCGGTGATACCGGAGGCGGCAC
TGGATCATCCGGTGGCGGATCAGCTGCTGGTGGTGAAGCCAGTGATGGCC
GTCATGCTGGTGGGGGATACAATGGATGGATGTACCGTGGGATGATGATG
ATGCGACATCAAGACACGTTTATGGCTCTGGGGGATTTATCATCATCATC
TTCATCAGATGGGCGCTGGAATAAGTGGGTCCCCCGCTGCATCGATTCTG
CCTCCCCAAAGGCGGCGGAGCAACCATGGAGTTATTAGGCAAGTAGGTCT
ATTTCGACCTTCGGCTCTGGAACTTTAATGGTTTATTGCACCACCTAAAT
TGTTCCTAAATTCTATTAAAAACGCACCTGT
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