EY660131

Overview
NameEY660131
Unique NameEY660131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: DPOE3_BOVIN (DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.705e-13
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  207 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKY-REMEGEK 503
            ++ R +D  LP A ++RI+K+ALP    ISK+A+  +    S F+ + T  A++   + KRKT+N  D+L AM  + F+ +V PLK  L+ Y RE +G+K
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: DPOE3_MOUSE (DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  207 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEK 503
            ++ R +D  LP A ++RI+K+ALP    ISK+A+  +    S F+ + T  A++   + KRKT+N  D+L AM  + F+ ++ PLK  L+ YR  E  K
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGK 99          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NC2B_ARATH (Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 33/100 (33.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  219 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQ--KYREMEGEKTSM 512
            ++D  LP A +++I+K+ LP + ++++DA++ + EC  EFI+ ++ E++D C +E ++TI  + +L A+  LGF EY+E +    +  KY  M+  + S+
Sbjct:   11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSV 110          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 32/90 (35.56%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  216 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYR 485
            +E +  LP A VS+++K+ LP + K S + ++ + EC  EFI  I+ EA+D C RE+++TI  + ++ A+T LGF +Y + +     K++
Sbjct:    7 KEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHK 96          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NC2B_RAT (Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 35/107 (32.71%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYR--EMEGEKTSMGREN 524
            S  + D  +P A +++++K+ LP N +++ DA+E V  C +EFI  I+ EA++ C + ++KTI+ + ++ A+ +LGF  Y+  +K  LQ+ +   ++  K S   EN
Sbjct:    5 SGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN 110          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NC2B_MOUSE (Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 35/107 (32.71%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYR--EMEGEKTSMGREN 524
            S  + D  +P A +++++K+ LP N +++ DA+E V  C +EFI  I+ EA++ C + ++KTI+ + ++ A+ +LGF  Y+  +K  LQ+ +   ++  K S   EN
Sbjct:    5 SGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN 110          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NC2B_HUMAN (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 35/107 (32.71%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYR--EMEGEKTSMGREN 524
            S  + D  +P A +++++K+ LP N +++ DA+E V  C +EFI  I+ EA++ C + ++KTI+ + ++ A+ +LGF  Y+  +K  LQ+ +   ++  K S   EN
Sbjct:    5 SGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN 110          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NC2B_CHICK (Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 35/107 (32.71%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYR--EMEGEKTSMGREN 524
            S  + D  +P A +++++K+ LP N +++ DA+E V  C +EFI  I+ EA++ C + ++KTI+ + ++ A+ +LGF  Y+  +K  LQ+ +   ++  K S   EN
Sbjct:    5 SGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN 110          
The following BLAST results are available for this feature:
BLAST of EY660131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DPOE3_BOVIN7.705e-1339.00DNA polymerase epsilon subunit 3 OS=Bos taurus GN=... [more]
DPOE3_MOUSE2.242e-1237.37DNA polymerase epsilon subunit 3 OS=Mus musculus G... [more]
NC2B_ARATH6.523e-1233.00Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1... [more]
NC2B_DICDI8.519e-1235.56Protein Dr1 homolog OS=Dictyostelium discoideum GN... [more]
NC2B_RAT2.479e-1132.71Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1[more]
NC2B_MOUSE2.479e-1132.71Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1[more]
NC2B_HUMAN2.479e-1132.71Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1[more]
NC2B_CHICK2.479e-1132.71Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-H04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660131 ID=EY660131; Name=EY660131; organism=Citrus sinensis; type=EST; length=881bp
CCACGCGTCCGCCCATTTTACCCCTCTTGTTTTCTCATAATTCTCAATTC
CCCACTCTCCTGAAAAATCCAGTCTTTATTATCTGACAAAATCAAAATTC
GATCTTTCGATCTGGGTATTTTGAGAATTTTTTCTTTTTAAATATTGTGA
TGGCTGATTCGGACAACGATTCTGGGGGGCAAAACAACAGCAACGCAAAC
AGCGAGCTGTCGGCGAGAGAACAGGATAGGTTCTTGCCGATAGCTAATGT
AAGCAGGATAATGAAGAAGGCTTTGCCAGCGAATGCGAAGATATCAAAGG
ACGCTAAAGAGACAGTGCAAGAGTGTGTGTCGGAGTTTATAAGTTTCATA
ACTGGCGAAGCTTCTGACAAGTGTCAGCGCGAGAAGCGGAAGACGATCAA
CGGTGATGATTTGTTGTGGGCCATGACGACTTTAGGCTTCGAAGAGTACG
TGGAACCCTTGAAGGTCTATTTGCAAAAGTATAGGGAGATGGAGGGAGAG
AAGACTTCCATGGGGAGGGAGAATGACAGCGGTGATACCGGAGGCGGCAC
TGGATCATCCGGTGGCGGATCAGCTGCTGGTGGTGAAGCCAGTGATGGCC
GTCATGCTGGTGGGGGATACAATGGATGGATGTACCGTGGGATGATGATG
ATGCGACATCAAGACACGTTTATGGCTCTGGGGGATTTATCATCATCATC
TTCATCAGATGGGCGCTGGAATAAGTGGGTCCCCCGCTGCATCGATTCTG
CCTCCCCAAAGGCGGCGGAGCAACCATGGAGTTATTAGGCAAGTAGGTCT
ATTTCGACCTTCGGCTCTGGAACTTTAATGGTTTATTGCACCACCTAAAT
TGTTCCTAAATTCTATTAAAAACGCACCTGT
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