EY660127

Overview
NameEY660127
Unique NameEY660127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.368e-44
Identity = 80/110 (72.73%), Postives = 94/110 (85.45%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ETLSYLP LS E LL E+ +LL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   70 ETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.368e-44
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ETLSYLPPLSD  LL ++ +LL  GWIPC+EFELE  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KP G
Sbjct:   72 ETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.787e-44
Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 3
Query:   15 VRLEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            + ++  ETLSYLP LS E LL EI +LL++GW+PCLEFE E G+VYREH SSPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K YP + +RIIGFDN RQVQCISF+A KP
Sbjct:   64 INMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.049e-44
Identity = 82/113 (72.57%), Postives = 94/113 (83.19%), Query Frame = 3
Query:   21 LEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 359
            L+  ETLSYLPPLS E+L K+I +L+  GWIPCLEFELE  +VYRE++ SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISF+A KPP
Sbjct:   68 LQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.982e-44
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 359
            ETLSYLP L++  L KE+ +LLR+ WIPC+EFELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   68 ETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.982e-44
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 359
            ETLSYLP L++  L KE+ +LLR+ WIPC+EFELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   68 ETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.791e-44
Identity = 77/110 (70.00%), Postives = 96/110 (87.27%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ETLSYLP L++  L KE+ +LLR+ W+PCLEFELE G+VYRE+ SSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQC+SF+A+KP G
Sbjct:   63 ETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.791e-44
Identity = 77/107 (71.96%), Postives = 96/107 (89.72%), Query Frame = 3
Query:   42 SYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            +YLPPLS EALLK++ +L+RS W+PCLEF  + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.791e-44
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            ETLSYLPPLSD  LL ++ +LL  GWIPC+EFELE  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KP
Sbjct:   73 ETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.870e-44
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = 3
Query:   21 LEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            L+  ETLSYLPPL++  L KE+ +LLR  W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI F+A++P G
Sbjct:   64 LKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
The following BLAST results are available for this feature:
BLAST of EY660127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS1_NICSY1.368e-4472.73Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_AMAHP1.368e-4472.73Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_STELP1.787e-4471.05Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR3.049e-4472.57Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_BRANA3.982e-4472.48Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS1_BRANA3.982e-4472.48Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FLATR6.791e-4470.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT6.791e-4471.96Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_AMAHP6.791e-4473.15Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_HELAN8.870e-4467.54Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660127 ID=EY660127; Name=EY660127; organism=Citrus sinensis; type=EST; length=909bp
CAAAGACCGCGCGCGTCCGGCTTGAAGATTCCGAGACTCTCTCATACCTC
CCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCACTCACCTTCTCCG
CTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGT
ACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACA
ATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAA
GGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTA
TCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCC
AAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGC
AATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCA
ATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTG
CTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTATATA
TATTTTAATAATTGAATCCTTTGTTTTCAGTTTCATTAAAAAAAAAAAAA
AAAAAAAAGGGGGGCCCCCCATAAGGGGTCAAGATGTCGAACCCCCGGGA
GGCGGCGCCCCATATCTTTTATAAGGGCCCCCATAATATAATTAACTGGG
CGGCGCGTTTAAAAAACGTGGGGGGGGGGAGAACCCCCGGGGTGACCCCA
TTTTATAGCGTTTCACGAAAACCCCCTTTCTCCGCCGGGGGGTAATAAGC
AAAAGGGCGGCCAGATACCCTCTTCCCACAATTGCGCAACCAAAAAGAGA
AATAGAAACCCGCCCTCACGGGAGATTACAACTGGGGGGGGGGGGGAACC
CCACCCCTG
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