EY660127

Overview
NameEY660127
Unique NameEY660127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.870e-44
Identity = 76/108 (70.37%), Postives = 94/108 (87.04%), Query Frame = 3 
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            ETLSYLPPLS+E+LLKE+ +LL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:   74 ETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181
[Close]
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.870e-44
Identity = 76/108 (70.37%), Postives = 94/108 (87.04%), Query Frame = 3 
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            ETLSYLPPLS+E+LLKE+ +LL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:   70 ETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177
[Close]
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.870e-44
Identity = 76/108 (70.37%), Postives = 94/108 (87.04%), Query Frame = 3 
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            ETLSYLPPLS+E+LLKE+ +LL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:   71 ETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178
[Close]
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 8.870e-44
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 3 
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ETLSYLPPL+ E LLK+I +LLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:   60 ETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168
[Close]
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.870e-44
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 3 
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ETLSYLPPL+ E LLK+I +LLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:   60 ETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168
[Close]
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 8.870e-44
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 3 
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ETLSYLPPL+ E LLK+I +LLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:   60 ETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168
[Close]
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.158e-43
Identity = 76/108 (70.37%), Postives = 94/108 (87.04%), Query Frame = 3 
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            ETLSYLPPLS+E+L+KE+ +LL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISF+A KP
Sbjct:   71 ETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178
[Close]
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.158e-43
Identity = 74/110 (67.27%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ETLSYLPPL+ + L +++ +LL + W+PCLEFE + G+VYREHH+SPGYYDGRYWTMWKLPM+GCTD  QVL E+ E +KEYP++F+RIIGFD+ RQVQC+SF+A KP G
Sbjct:   70 ETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAG 179
[Close]
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.158e-43
Identity = 76/108 (70.37%), Postives = 94/108 (87.04%), Query Frame = 3 
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            ETLSYLPPLS+E+L+KE+ +LL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISF+A KP
Sbjct:   70 ETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177
[Close]
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.976e-43
Identity = 81/112 (72.32%), Postives = 95/112 (84.82%), Query Frame = 3 
Query:   21 LEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            L+  ETLSYLPPLS E L KE+ +LLR+ W+PC+EF  E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:   66 LKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
The following BLAST results are available for this feature:
BLAST of EY660127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS6_MESCR8.870e-4470.37Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_MESCR8.870e-4470.37Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_MESCR8.870e-4470.37Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_ORYSJ8.870e-4475.45Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS1_ORYSJ8.870e-4475.45Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI8.870e-4475.45Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_MESCR1.158e-4370.37Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_SPIOL1.158e-4367.27Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_MESCR1.158e-4370.37Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_LEMGI1.976e-4372.32Ribulose bisphosphate carboxylase small chain SSU5... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660127 ID=EY660127; Name=EY660127; organism=Citrus sinensis; type=EST; length=909bp
CAAAGACCGCGCGCGTCCGGCTTGAAGATTCCGAGACTCTCTCATACCTC
CCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCACTCACCTTCTCCG
CTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGT
ACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACA
ATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAA
GGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTA
TCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCC
AAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGC
AATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCA
ATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTG
CTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTATATA
TATTTTAATAATTGAATCCTTTGTTTTCAGTTTCATTAAAAAAAAAAAAA
AAAAAAAAGGGGGGCCCCCCATAAGGGGTCAAGATGTCGAACCCCCGGGA
GGCGGCGCCCCATATCTTTTATAAGGGCCCCCATAATATAATTAACTGGG
CGGCGCGTTTAAAAAACGTGGGGGGGGGGAGAACCCCCGGGGTGACCCCA
TTTTATAGCGTTTCACGAAAACCCCCTTTCTCCGCCGGGGGGTAATAAGC
AAAAGGGCGGCCAGATACCCTCTTCCCACAATTGCGCAACCAAAAAGAGA
AATAGAAACCCGCCCTCACGGGAGATTACAACTGGGGGGGGGGGGGAACC
CCACCCCTG
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