EY660127

Overview
NameEY660127
Unique NameEY660127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.155e-41
Identity = 76/114 (66.67%), Postives = 95/114 (83.33%), Query Frame = 3
Query:   15 VRLEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            V L+  ETLSYLP LS E+LLK+I +L+R+GW+PCLEF LE G+V R+++ SPGYYDGRYWTMWKLPM+GCT A QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  KP
Sbjct:   66 VGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.120e-41
Identity = 75/110 (68.18%), Postives = 92/110 (83.64%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ETLSYLPPLS E LLK++ +L+RS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RIIGFDN RQVQ +SF+A+KPPG
Sbjct:   60 ETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.120e-41
Identity = 76/108 (70.37%), Postives = 89/108 (82.41%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            ETLSYLPPL+ + LLKE+ +LLR GW+PCLEFEL KG+VY EH+ SP YYDGRYWTMWKLPM+G TD  QV+KEV EV   YP +FVR+IGF+N RQVQCISF+A  P
Sbjct:   26 ETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.045e-40
Identity = 75/110 (68.18%), Postives = 91/110 (82.73%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ETLSYLPPLS + LLK++ +LLR+GWIPCLEF  + G+VYRE+ +SP YYDGRYWTMWKLPM+GC DATQV KE+ E  K YP +F R+IGFDN +Q QC+SF+A KPPG
Sbjct:   60 ETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.325e-39
Identity = 76/114 (66.67%), Postives = 91/114 (79.82%), Query Frame = 3
Query:   21 LEDSETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            L+  ETLSYLPPL+ E LL E+ +LL  GWIP LEFE++ G+VYREH  SPGYYDGRYWTMWKLPM+G TD  QV+ EV EV+K  P +FVR IGF++KR+VQCISF+A KP G
Sbjct:    9 LKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.500e-38
Identity = 70/108 (64.81%), Postives = 90/108 (83.33%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            ETLSYLP L++E L+KE+ +LLR+ W+PCLEF+LE G + R+++ SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E  K YP +F+R+IGFDN RQVQCISF+  KP
Sbjct:   64 ETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.620e-37
Identity = 70/108 (64.81%), Postives = 88/108 (81.48%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 356
            ETLSYLP L+ E L+KE+ +LL++ W+PCLEFE E G + R + +SPGYYDGRYW MWKLPM+GCT+A+QVL EV E  K YP++F+R+IGFDN RQVQCISF+  KP
Sbjct:   80 ETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.677e-34
Identity = 69/110 (62.73%), Postives = 85/110 (77.27%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 362
            ETLSYLPPL+ E LLK++ +LLR+ W+PCLEF  E G+VYRE+ +SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E    YP     I+GFDN RQ Q ++F+A KP G
Sbjct:   59 ETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.419e-33
Identity = 64/109 (58.72%), Postives = 85/109 (77.98%), Query Frame = 3
Query:   33 ETLSYLPPLSDEALLKEITHLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFLAAKP 356
            ETLSYLPPLS +AL K+I ++++SGW PC+EF+++ G V RE  + PGYYDGRYWTMWKLPM+GCTD+  VL+E+ E +K Y    ++R +GFDN RQVQC SF+  +P
Sbjct:   71 ETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178          
BLAST of EY660127 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.677e-32
Identity = 60/77 (77.92%), Postives = 70/77 (90.91%), Query Frame = 3
Query:  129 ELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 359
            ELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
The following BLAST results are available for this feature:
BLAST of EY660127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS5_FRIAG3.155e-4166.67Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_AEGTA4.120e-4168.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA4.120e-4170.37Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE2.045e-4068.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL1.325e-3966.67Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_PINTH2.500e-3864.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA1.620e-3764.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY1.677e-3462.73Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MARPA1.419e-3358.72Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SINAL2.677e-3277.92Ribulose bisphosphate carboxylase small chain (Fra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660127 ID=EY660127; Name=EY660127; organism=Citrus sinensis; type=EST; length=909bp
CAAAGACCGCGCGCGTCCGGCTTGAAGATTCCGAGACTCTCTCATACCTC
CCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCACTCACCTTCTCCG
CTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGT
ACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACA
ATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAA
GGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTA
TCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCC
AAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGC
AATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCA
ATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTG
CTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTATATA
TATTTTAATAATTGAATCCTTTGTTTTCAGTTTCATTAAAAAAAAAAAAA
AAAAAAAAGGGGGGCCCCCCATAAGGGGTCAAGATGTCGAACCCCCGGGA
GGCGGCGCCCCATATCTTTTATAAGGGCCCCCATAATATAATTAACTGGG
CGGCGCGTTTAAAAAACGTGGGGGGGGGGAGAACCCCCGGGGTGACCCCA
TTTTATAGCGTTTCACGAAAACCCCCTTTCTCCGCCGGGGGGTAATAAGC
AAAAGGGCGGCCAGATACCCTCTTCCCACAATTGCGCAACCAAAAAGAGA
AATAGAAACCCGCCCTCACGGGAGATTACAACTGGGGGGGGGGGGGAACC
CCACCCCTG
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