EY660107

Overview
NameEY660107
Unique NameEY660107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660107 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 337.421 bits (864), Expect = 6.849e-92
Identity = 175/249 (70.28%), Postives = 192/249 (77.11%), Query Frame = 1
Query:   58 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELQNGRLAMFSMFGFFVQAIVTGEGSIENLYDTL 792
            AT A+   A AG+ A +   E          GRITMR++  K  P    S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKE++NGRLAMFSMFGFFVQAIVTG+G +ENL D L
Sbjct:    4 ATMALSSPALAGKAAAKVFGE----------GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 242          
BLAST of EY660107 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 6.849e-92
Identity = 173/249 (69.48%), Postives = 194/249 (77.91%), Query Frame = 1
Query:   58 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELQNGRLAMFSMFGFFVQAIVTGEGSIENLYDTL 792
            +T A+   AFAG+      N       V   GR+TMR+TV   K    S WYG DR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPLGLA DP+ FAELKVKEL+NGRLAMFSMFGFFVQAIVTG+G IENL D L
Sbjct:    4 STMALSSPAFAGKAV----NLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 248          
BLAST of EY660107 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 1.168e-91
Identity = 172/248 (69.35%), Postives = 191/248 (77.02%), Query Frame = 1
Query:   58 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELQNGRLAMFSMFGFFVQAIVTGEGSIENLYD 786
            +T A+  +AFAG+     S+ F          R+TMR+T  K+ P     S WYGPDR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ F ELKVKEL+ GRLAM SMFGFFVQAIVTG+G +ENL D
Sbjct:    4 STMALSSTAFAGKAVNVPSSSFGE-------ARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLAD 244          
BLAST of EY660107 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.993e-91
Identity = 173/248 (69.76%), Postives = 196/248 (79.03%), Query Frame = 1
Query:   58 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELQNGRLAMFSMFGFFVQAIVTGEGSIENLYDTL 792
            +T A+   AFAG+ A++ S       G    GR+TMR+TVK T  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPLGLA DP+ FAELKVKE++NGRLAMFSMFGFFVQAIVTG+G +ENL D L
Sbjct:    4 STMALSSPAFAGK-AVKLSPGASEVFGT---GRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 247          
BLAST of EY660107 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 4.439e-91
Identity = 164/216 (75.93%), Postives = 180/216 (83.33%), Query Frame = 1
Query:  151 GRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELQNGRLAMFSMFGFFVQAIVTGEGSIENLYDTL 792
            GR++MR+T   T  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEA WFKAG+QIFSEGGLDYLGN +LIHAQSILAIWA QV+LMG VEGYRI                +FDPL LADDP+ FAELKVKE++NGRLAMFSMFGFFVQAIVTG+G +ENL D L
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 226          
BLAST of EY660107 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 2.203e-90
Identity = 166/218 (76.15%), Postives = 180/218 (82.57%), Query Frame = 1
Query:  154 RITMRRTVK-----STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELQNGRLAMFSMFGFFVQAIVTGEGSIENLYDTL 792
            RITMR+T       ++  S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI                AFDPLGLADDP+ FAELKVKE++NGRLAMFSMFGFFVQAIVTG+G +ENL D L
Sbjct:   29 RITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 246          
BLAST of EY660107 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 4.594e-88
Identity = 157/204 (76.96%), Postives = 174/204 (85.29%), Query Frame = 1
Query:  181 STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELQNGRLAMFSMFGFFVQAIVTGEGSIENLYDTL 792
            ++  S W+GPD  KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI                +FDPLGLA+ P+ FAELKVKEL+NGRLAMFSMFGFFV AIVTG+G +ENL D L
Sbjct:    6 ASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHL 209          
BLAST of EY660107 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.746e-87
Identity = 163/246 (66.26%), Postives = 188/246 (76.42%), Query Frame = 1
Query:   61 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELQNGRLAMFSMFGFFVQAIVTGEGSIENLYD 786
            T ++  S+FAG+      +  +  +G A   R+ MR+T     Q    S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEA WFKAG+QIFS+GGLDYLGNP+L+HAQS+LAIWACQVVLMG VEGYRI                +FDPLGLA+ P  FAELKVKE++NGRLAMFSMFGFFVQAIVTG+G +E+L D
Sbjct:    5 TMSLSSSSFAGKAVKNLPSSAL--IGDA---RVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLAD 245          
BLAST of EY660107 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.634e-85
Identity = 164/249 (65.86%), Postives = 182/249 (73.09%), Query Frame = 1
Query:   58 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELQNGRLAMFSMFGFFVQAIVTGEGSIENLYDTL 792
            AT AI   A  G+ A    + F         GRITMR+T  K  P    S WYG DR  YLGP S   PSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+   LGCVFPE+L++NGVKFGE VWFKAG+QIFSEGGL + GNP+L+HAQSILAIWACQVVLMG VEGY +                +FDPLGL DDP++FAELKVKE++NGRLAMFSMFGFFVQAIVTG+G IENL D L
Sbjct:    4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 245          
BLAST of EY660107 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 2.134e-85
Identity = 173/270 (64.07%), Postives = 194/270 (71.85%), Query Frame = 1
Query:   58 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELQNGRLAMFSMFGFFVQAIVTGEGSIENLYDTLL-----ILWAQCLGLLHYLCPGK 846
            +T A+  S+ AGQ      +    ++GV   GR++MR+T   T  S   WYGPDR KYLGPFS + PSYLTGEF G        LSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI                +FDPLGLADDP+  AELKVKEL+NGRLAMFSMFGFFVQAIVTG+G +ENL D L        WA        LCPGK
Sbjct:    4 STMALSSSSLAGQAMKLAPS--TPELGV---GRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT----KLCPGK 256          
The following BLAST results are available for this feature:
BLAST of EY660107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
CB22_ORYSJ6.849e-9270.28Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH6.849e-9269.48Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_MAIZE1.168e-9169.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL1.993e-9169.76Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_SOYBN4.439e-9175.93Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_ORYSJ2.203e-9076.15Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PEA4.594e-8876.96Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_WHEAT1.746e-8766.26Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB48_MAIZE1.634e-8565.86Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_SOYBN2.134e-8564.07Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660107 ID=EY660107; Name=EY660107; organism=Citrus sinensis; type=EST; length=925bp
CCACGCGTCCGAGAAGCTTCATCAACAAAAGGAAAAGCTTTCGCATAAGA
ACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCG
CCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGT
GGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGCATCTG
GTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACAC
CATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCT
GGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGT
GATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTG
AAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAG
GCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCC
CAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTG
TGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGT
GAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTT
GGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCTNCAGA
ATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCTTTGTTCAGGCTATT
GTCACTGGGGAAGGGTCAATTGAGAACCTCTACGACACATTGCTGATCCT
GTGGGCACAATGCCTGGGCCTATTGCACTACCTTTGTCCCGGAAAGTGAG
AAACTCTGACTTGATGGGGCCTGTTTATCTGTAACATTATCTATCATCGT
ATGTGCTTTGGGGAAATCTGTCATG
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