EY660097

Overview
NameEY660097
Unique NameEY660097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2753 contig Csv1_Contig2753:401..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_PICGU (40S ribosomal protein S1 OS=Pichia guilliermondii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.075e-32
Identity = 70/117 (59.83%), Postives = 91/117 (77.78%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKM 360
            KT D+Y LR+F I FTKR PNQVK+T YAQ+S++R+IR+KM EIM  + ++  L  L +K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG LM +HG+  SE+ G K+
Sbjct:  128 KTADDYYLRVFAIAFTKRQPNQVKKTTYAQSSKLREIRKKMMEIMQREVSNSTLAQLTQKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGNLMSLHGEGASEEKGKKV 244          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_IXOSC (40S ribosomal protein S3a OS=Ixodes scapularis PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.075e-32
Identity = 68/132 (51.52%), Postives = 94/132 (71.21%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------------DVGVKMERP 369
            +TTD Y LRMFCIGFTK+  NQ+K+TCYAQ +Q+R IR+KM E+M+ + +S +LK +V K I   IG++IEK+   IYPL +V IRKVK+LK PKF+LGKL+E+HG+ +              + GVK++RP
Sbjct:  128 RTTDGYLLRMFCIGFTKKCANQLKKTCYAQHNQVRLIRKKMTEMMVVEVSSSNLKDVVNKLIPGSIGKDIEKSCQHIYPLHDVLIRKVKVLKKPKFELGKLLELHGEGTSKGGAASTAAVAKGEEGVKVDRP 259          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3AB_XENLA (40S ribosomal protein S3a-B OS=Xenopus laevis GN=rps3a-B PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.075e-32
Identity = 68/125 (54.40%), Postives = 92/125 (73.60%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 366
            KTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V+ RKVK+LK PKF+LGKLME+HG+        +++ G K+ER
Sbjct:  128 KTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMSREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYARKVKMLKKPKFELGKLMELHGEGGGSGKPAADETGAKVER 252          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_AJECH (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain H143) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32
Identity = 73/128 (57.03%), Postives = 97/128 (75.78%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 393
            KTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREI+K+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:  128 KTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIDKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.622e-32
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY----SEDVGVKMERPA-DEPIPEA 393
            KTTD Y LR+F I FTK+  NQVK+  YA++S IR IR+KM EI+  +A SCDL+  V K I E+IGRE+EKAT  I+PL++V++RKVK+LKAPK DL KL+EVHG      +ED GVK       EP P A
Sbjct:  127 KTTDGYLLRVFVIAFTKKRANQVKKNTYAKSSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKATQGIFPLKDVYVRKVKVLKAPKDDLNKLLEVHGGAAIAGAEDAGVKARNTEFKEPAPLA 258          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_CRYHO (40S ribosomal protein S3a OS=Cryptosporidium hominis GN=Chro.40360 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.622e-32
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH--GDYSEDVGVKM 360
            KT+D Y LR+FCI FT+R+ +QVK TCYAQ SQIRQIR+KM EI+ A+A    L+ LV+KFI E IG+EIEKA   I+PLQ+VFIRKVK+L  P FD+ +LME H   D  E+ G K+
Sbjct:  128 KTSDGYVLRLFCIAFTRRMADQVKSTCYAQTSQIRQIRKKMVEIITAEAEGTTLRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFDVSRLMESHVGADGVEEKGTKV 245          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.345e-31
Identity = 67/117 (57.26%), Postives = 90/117 (76.92%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 360
            KT D+Y LR+F I FTKR  NQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:  128 KTADDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_LODEL (40S ribosomal protein S1 OS=Lodderomyces elongisporus GN=RPS1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 65/116 (56.03%), Postives = 88/116 (75.86%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 360
            KT D+Y LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EI+  + ++  L  L  K I E+I REIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ SE+ G K+
Sbjct:  115 KTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMVEILTREVSNSTLSQLTSKLIPEVISREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEASEEKGKKV 230          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.913e-31
Identity = 67/128 (52.34%), Postives = 94/128 (73.44%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 393
            KT+D+Y LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+     + + EA
Sbjct:  128 KTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKVSAGFKDVVLEA 255          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.675e-31
Identity = 74/128 (57.81%), Postives = 94/128 (73.44%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 393
            KTTD+Y +R+F I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:  128 KTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
The following BLAST results are available for this feature:
BLAST of EY660097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
RS3A_PICGU2.075e-3259.8340S ribosomal protein S1 OS=Pichia guilliermondii ... [more]
RS3A_IXOSC2.075e-3251.5240S ribosomal protein S3a OS=Ixodes scapularis PE=... [more]
RS3AB_XENLA2.075e-3254.4040S ribosomal protein S3a-B OS=Xenopus laevis GN=r... [more]
RS3A_AJECH3.539e-3257.0340S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_USTMA4.622e-3256.0640S ribosomal protein S1 OS=Ustilago maydis GN=RPS... [more]
RS3A_CRYHO4.622e-3259.3240S ribosomal protein S3a OS=Cryptosporidium homin... [more]
RS3A_CANTT1.345e-3157.2640S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A_LODEL2.294e-3156.0340S ribosomal protein S1 OS=Lodderomyces elongispo... [more]
RS3A2_DEBHA3.913e-3152.3440S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]
RS3A_COCP76.675e-3157.8140S ribosomal protein S1 OS=Coccidioides posadasii... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660097 ID=EY660097; Name=EY660097; organism=Citrus sinensis; type=EST; length=666bp
CCACGCGTCCGCAAGACCACTGATAACTACACATTGAGGATGTTCTGCAT
TGGATTCACCAAGAGACTTCCAAATCAGGTTAAGAGGACTTGCTACGCAC
AGGCCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGATT
GCTCAGGCAGCATCCTGTGATCTTAAGGGCTTGGTCGAAAAGTTCATTGC
TGAAATAATTGGAAGAGAGATTGAGAAGGCAACCTTAAGCATATACCCCT
TACAAAATGTTTTCATTCGCAAAGTGAAGATCTTGAAAGCTCCTAAGTTT
GATCTTGGAAAGTTGATGGAGGTTCATGGTGATTACTCTGAGGATGTTGG
TGTAAAGATGGAAAGGCCAGCTGATGAGCCCATTCCTGAAGCACCAACTG
AAGTGATTGGAGCTTGAATAAAGAAATTTTTGTAGTTTGTCTTTATAACC
AATCAGATCTAGTAATTTTTGGGCAGTTTTGTTTGTGATGAACTCAAATT
TGTTTTGAGTTTACATATTTTATTCTACCTGATATTTGAGATGGCTGCAG
CGGTTTGTGGTATGAACATGATTACCTTATTCTTTATTCCAGTGGATTAG
ATACATTATTCTAATTTTCTTCAAATCCAGCTTAGAGAAGCATCTATCTT
TAAAAAAAAAAAAAAA
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