EY705684

Overview
NameEY705684
Unique NameEY705684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10218 contig Csv1_Contig10218:1..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: LDL2_ARATH (Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12
Identity = 52/152 (34.21%), Postives = 78/152 (51.32%), Query Frame = 3
Query:    9 PKVFWPN-VEFLGVVSDTSYGCSYFLNL---HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAA 428
            P VFW + ++  G ++++S     F      H  +G   LV + AG+ A+  E        +    +L+ I       +PD   PIQ + + WG+D  S GSYS+  VG S   Y+ L   V N LFFAGEAT+  +P ++HGA+ +GL  A
Sbjct:  442 PSVFWGDELDTFGCLNESSINRGEFFLFYAYHTVSGGPALVALVAGEAAQRFECTEPSVLLHRVLKKLRGIYGPKGVVVPD---PIQTVCTRWGSDPLSYGSYSHVRVGSSGVDYDILAESVSNRLFFAGEATTRQHPATMHGAYLSGLREA 590          
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: KDM1_MOUSE (Lysine-specific histone demethylase 1 OS=Mus musculus GN=Kdm1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.413e-12
Identity = 53/158 (33.54%), Postives = 76/158 (48.10%), Query Frame = 3
Query:   12 KVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 428
            +VFW P+V   G V  T+        F NL+KA    +L+ + AG+ A  +E +SD+         LK I   ++   P + +VS W  D  + GSYSY   G S + Y+ +  P+               LFFAGE T  +YP +VHGA  +GL  A
Sbjct:  669 RVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 823          
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: KDM1_HUMAN (Lysine-specific histone demethylase 1 OS=Homo sapiens GN=KDM1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.413e-12
Identity = 53/158 (33.54%), Postives = 76/158 (48.10%), Query Frame = 3
Query:   12 KVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 428
            +VFW P+V   G V  T+        F NL+KA    +L+ + AG+ A  +E +SD+         LK I   ++   P + +VS W  D  + GSYSY   G S + Y+ +  P+               LFFAGE T  +YP +VHGA  +GL  A
Sbjct:  668 RVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 822          
The following BLAST results are available for this feature:
BLAST of EY705684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
LDL2_ARATH3.759e-1234.21Lysine-specific histone demethylase 1 homolog 2 OS... [more]
KDM1_MOUSE6.413e-1233.54Lysine-specific histone demethylase 1 OS=Mus muscu... [more]
KDM1_HUMAN6.413e-1233.54Lysine-specific histone demethylase 1 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-046-F03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705684 ID=EY705684; Name=EY705684; organism=Citrus sinensis; type=EST; length=874bp
CCACGCGTCCGAAAGTGTTTTGGCCAAATGTGGAGTTCTTGGGGGTGGTT
TCAGATACATCATATGGGTGCAGCTACTTTCTAAATCTTCACAAGGCAAC
AGGTCACTGTGTCCTTGTTTACATGCCTGCCGGGCAGTTGGCTAGAGACA
TTGAGAAAATGTCCGATGAAGCTGCTGCTAATTTTGCTTTTACGCAACTC
AAGAAGATCCTTCCTGATGCATCTTCCCCGATCCAATATCTTGTTTCTCA
TTGGGGCACAGATGCCAACTCGCTTGGGTCCTACAGCTACGATACAGTAG
GCAAATCCCATGATCTGTATGAAAGGCTAAGGATACCAGTGGACAACCTA
TTCTTTGCCGGTGAGGCAACAAGCATGAGCTACCCAGGGTCGGTTCATGG
TGCATTCTCGACTGGACTGATGGCTGCCGAGGACTGCCGGATGCGTGTTC
TGGAGCGTTATGGGGAATTGGACTTATTCCAGCCAGTAATGGGTGAGGAA
ACCCCGATTTCTGTCCCATTTTTGATCTCCCGTCTGTAACTTAAAAAGAG
GGCTGTCAGTTATACTAGAAAGTAATGGTAGTATATTGGTGTAGATTTAT
GTAAACACTGGGACTGATCTAGCTAACACATTGCTGCCCATTTGACTACT
GGCTGTGAGGGGAATGTTGTGAAAAACAACCATTTTCCCATTGACCAATC
AGTTGAATAATTGGCAAATGTGTATAAATTGCCATGTGTGGCATGTACCT
ATAGCATTTTGGACTTTGGACAAAATTATGTAATAACAAAATTTTCGGAA
GNANGAGTGCGCTTTGTTTGNGTGGTGGTGGGTTGTAGTAGAGTATGAAT
GATTATAGTCAAAAAAAAAAGGGC
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