EY660088

Overview
NameEY660088
Unique NameEY660088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_ECO57 (Serine hydroxymethyltransferase OS=Escherichia coli O157:H7 GN=glyA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.969e-57
Identity = 115/233 (49.36%), Postives = 157/233 (67.38%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            Q + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY + ++TG+IDY  LEK A   +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G EE+
Sbjct:   26 QEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEEL 248          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_ECO55 (Serine hydroxymethyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.969e-57
Identity = 115/233 (49.36%), Postives = 157/233 (67.38%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            Q + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY + ++TG+IDY  LEK A   +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G EE+
Sbjct:   26 QEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEEL 248          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_ECO45 (Serine hydroxymethyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.969e-57
Identity = 115/233 (49.36%), Postives = 157/233 (67.38%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            Q + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY + ++TG+IDY  LEK A   +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G EE+
Sbjct:   26 QEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEEL 248          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_ECO27 (Serine hydroxymethyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.969e-57
Identity = 115/233 (49.36%), Postives = 157/233 (67.38%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            Q + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY + ++TG+IDY  LEK A   +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G EE+
Sbjct:   26 QEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEEL 248          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_ECO24 (Serine hydroxymethyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.969e-57
Identity = 115/233 (49.36%), Postives = 157/233 (67.38%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            Q + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY + ++TG+IDY  LEK A   +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GLVAAGV P+P  +A VVTTTTHK+L GPRG +I  + G EE+
Sbjct:   26 QEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEEL 248          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_ALHEH (Serine hydroxymethyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.969e-57
Identity = 123/261 (47.13%), Postives = 161/261 (61.69%), Query Frame = 3
Query:    6 RPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            R Q   +ELI SEN+ S  V++A GSV+TNKY+EGYPG RYYGG E++D AE L  +RA + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG      K++     F  + Y +   TG +DY QLE+ A   +PK+I+ G SAY+R+ D++R+R + +   A +L DMAH++GLVAAGV PSP + ADV TTTTHK+LRGPRG +I  R   E           + KK  S     T GGP
Sbjct:   24 RRQEDHIELIASENYASPRVLEAQGSVLTNKYAEGYPGKRYYGGCEHVDEAERLAIERAKQLFGADY----ANVQPHSGSQANAAVYLALLQPGDTILGMSLDHGGHLTHG-----AKVNFSGRLFNAVQYGVCPDTGELDYAQLERLAKEHQPKMIIGGFSAYSRVVDWQRLRDIADSVGAYLLVDMAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRGGLILARANAE-----------VEKKLNSLVFPGTQGGP 264          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA1_PSEPK (Serine hydroxymethyltransferase 1 OS=Pseudomonas putida (strain KT2440) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.969e-57
Identity = 113/227 (49.78%), Postives = 154/227 (67.84%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVE 704
            +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG E++D  E+L  +RA + F  D      NVQ  SGS +N  VY ALL+  D I+ + L HGGHL+HG      K+S+    +  + Y ++ +TG IDYD++E+ A   +PK+IVAG SAY++  D+ R R + +K  A++  DMAH++GLVAAG+ P+P  +ADVVTTTTHK+LRGPRG +I  +   E
Sbjct:   30 IELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEALAIERAKQLFGADY----ANVQPHSGSSANGAVYLALLQAGDTILGMSLAHGGHLTHG-----AKVSSSGKLYNAVQYGIDTNTGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRAIADKVGALLFVDMAHVAGLVAAGLYPNPIPFADVVTTTTHKTLRGPRGGLILAKSNEE 247          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_STRMK (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=glyA PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.184e-57
Identity = 119/235 (50.64%), Postives = 159/235 (67.66%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEE 707
            T+ Q   +ELI SEN+TS +VM+A GS +TNKY+EGYPG RYYGG EY+D+AE L   R  + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG      K++A    F  + Y +N+  G IDYD++E+ A   +PK++VAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV PSP E+A VVT+TTHK+LRGPRG +I   KG +E
Sbjct:   23 TQRQEDHVELIASENYTSPAVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDIAEQLAIDRLKQLFGADY----ANVQPHSGSQANQAVYFALLQPGDTILGMSLAHGGHLTHG-----AKVNASGKLFNAVQYGVNDQ-GLIDYDEVERLALEHKPKMVVAGFSAYSQVIDWARFRAIADKVGAYLFVDMAHVAGLVAAGVYPSPLEHAHVVTSTTHKTLRGPRGGII-VAKGADE 246          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_OENOB (Serine hydroxymethyltransferase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.184e-57
Identity = 112/224 (50.00%), Postives = 151/224 (67.41%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            Q   +EL+ SENF S +V QA GSV+TNKYSEGYPG RYYGGNEYID+AE+L  +RA E F +       NVQ  SGS +NF+ Y A L P D+I+ ++L  GGHL+HG       +S     +E   Y+++  T  +DYD + K A  F+P LI+AGASAY+R  D++  R + ++  A ++ D+AHI+GL+AAG+ PSP   AD++TTTTHK+LRGP G MI
Sbjct:   21 QRHNIELVASENFVSKAVRQAQGSVLTNKYSEGYPGKRYYGGNEYIDIAENLAIERAKELFGVSY----ANVQPHSGSSANFEAYMAFLHPGDKILGMNLDSGGHLTHG-----ASVSFSGKMYEAQSYKVDSETELLDYDAILKQAKEFKPNLIIAGASAYSRTIDFQAFRDIADEVNAYLMVDIAHIAGLIAAGLHPSPVGLADIITTTTHKTLRGPCGGMI 235          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_STRM5 (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=glyA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.770e-57
Identity = 117/236 (49.58%), Postives = 159/236 (67.37%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            T+ Q   +ELI SEN+TS +VM+A GS +TNKY+EGYPG RYYGG EY+D+AE L   R  + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG      K++A    F  + Y +N+  G IDYD++E+ A   +PK++VAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV PSP E+A VVT+TTHK+LRGPRG +I  +   E++
Sbjct:   23 TQRQEDHVELIASENYTSPAVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDIAEQLAIDRLKQLFGADY----ANVQPHSGSQANQAVYFALLQPGDTILGMSLAHGGHLTHG-----AKVNASGKLFNAVQYGVNDQ-GLIDYDEVERLALEHKPKMVVAGFSAYSQVIDWARFRAIADKVGAYLFVDMAHVAGLVAAGVYPSPLEHAHVVTSTTHKTLRGPRGGIIVAKGAGEDL 248          
The following BLAST results are available for this feature:
BLAST of EY660088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ECO573.969e-5749.36Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO553.969e-5749.36Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO453.969e-5749.36Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO273.969e-5749.36Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO243.969e-5749.36Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ALHEH3.969e-5747.13Serine hydroxymethyltransferase OS=Alkalilimnicola... [more]
GLYA1_PSEPK3.969e-5749.78Serine hydroxymethyltransferase 1 OS=Pseudomonas p... [more]
GLYA_STRMK5.184e-5750.64Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_OENOB5.184e-5750.00Serine hydroxymethyltransferase OS=Oenococcus oeni... [more]
GLYA_STRM56.770e-5749.58Serine hydroxymethyltransferase OS=Stenotrophomona... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660088 ID=EY660088; Name=EY660088; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTT
ACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTA
CAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTG
ACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTG
GATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATC
TAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGG
CACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGAT
ACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAG
ATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTG
CCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCA
CGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGC
TATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTG
TCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCAC
AAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGT
NGAAGAGATTACAANNCAGGGAANNGAGTGTTTTATGATTATGAAGAAAA
AATAATCAAGCTGTCTTTCCTGGACTCCAGGTGGCCCACACACCACACAA
TTACTGGNTTAGCANGTGCCTTGAACAGGCACTACTCCGAGTATAAAGCT
ATCAGGAGCAAGTCTGAGCAATGCTCAAAATTGCACGATCT
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